Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1100 ATGATGGAGTTACCAGAAATTTGGGTATTGAAACTGGTTGTGGCATGTGCTTTTTGTCTGCATATATTTATCATATCAGTTTCTGGCTCTGCAACTGAAGGGTTTGAAAACATAGCATGTTGTGCTGATTCAAATTACACAGATCCCCAGACCACCTTAAATTACACAACAGATTACACATGGTTCCCTAACAGAGGAAGCTGCAGAAGACATGAAATTGGTTTGAATGAAAAAGTTCGACTGTTTTCTATAGATGAAGGAAAGAGATGTTACAATTTACCAACAATTAAGAATAAAGTATATCTGATAAGGGGCACATTTCCATTTGACAGTATAAATTCTTCATTTAATGTTTCAATTGGGGCAACACAATTAGGTGCAGTGAGACCATCCACGCCACAGGACTTGGAAATTGAGATTGAGGGAGTTTTTAGGGCTACCAAAGACTACATTGACTTCTGCTTAGTGAAGGGGGAGGTGGATCCGTTTATTTCTCAGCTGGAATTAAGGCCATTGCCAGAAGATTACCTACATGATTTGCCTGCCAGCGTTTTAAAATTGATAAGCAGAAATAGTCTCTGGGACACAAAAGATGAAATCAGGTTCCCAGATGACCCAAGTGATAGAATGTGGAAAGCAACTTCAAGTCCATCATCTGCTCTCCCGTTGTCTTACAATGTTAAAAATTTTGAGCTCAAATCCAACATGACACCACCTCTACGAGTCCTACAGACAGCTCTTACCCACCCTGAGAGATTGGAGATCCACAGCAGCCTTGACACTGAGGATTATGAATATCGTGTATTTCTCTACTTCCTTGAATTAAATAGCACTGTCAAAGAAGGGAAAAGGGTGTTTGACATCTATGTTAATAGCAAGATTCAAAGGGAAAATTTTGACATATTGGCGAGAGGGTCCAACTATACATACACTGTCTTGAATGTTTCAGCAAACGGTTTACTTAATTTAACCTTGGTCAAGACATCTGGTGCTGAGTTTGGACCCCTTTTGAATGCTTATGAGATCCTGCAAATGCGATCATGGATCGAAGAGACCAACCAAAAAGATGTGGAAGTGATTCAGAAGATTAGAGAAGAACTGTTGTTGCAAAACCAAAACACTAAAGTGCTAGAGAGTTGGACCGGAGACCCTTGTATTTTCCCCTGGCACGGAATAGAGTGTGATGGTTCAAATGGCTCGTCTGTTATCACCAAGCTGGATCTTTCCTCAAGTAATTTCAAAGGACCAATTCCTTCTACTGTTACTGGGATGACCAACTTAAAAATACTGAACCTGAGCCACAACAATTTCAATGGTTATATTCCCTCGTTTCCACCATCCTCCTTGTTGATATCAATAGATCTAAGCTACAATGATCTTATGGGGTCACTTCCAGAATCAATTGTCTCACTGCCATACTTGAAGTCTTTGTATTATGGCTGCAACAAACGCATGACTGAAGACACTCCAGCTAATTTGAATGGTTCCCTGATCAATACAGATGACGGAAGATGCAAAGCAAAAGAACCTAGATTTGGACAAGTATTTGTCATTGGTGCTATCACATGTGGATCACTTCTGATAACATTGGCAGTTGGAATCATTTTTGTTTGCCGCTATAGACAAAAGTTGATTCCATGGGAAGGATTTGGTGGAAAGAACTACTTAATGGAAACAAATGTAATATTCTCTTTGCCAAGCAAAGATGATTTCTTAATAAAGTCTGTATCAATTCAAACATTCACTTTGGAAGATATAGAGGTTGCCACAGAAAGGTACAAAACTTTGATAGGAGAAGGAGGATTTGGTTCTGTTTACCGGGGCACTCTAAATGACGGTCAAGAAGTGGCAGTGAAAGTCCGTTCAGCCACATCAACTCAGGGAACTCGAGAATTTGATAATGAGCTAAACCTTCTTTCAGCAATACAGCATGAAAACCTAGTGCCTCTTCTTGGTTACTGTAATGAAAATGATCAACAAATTCTTGTGTATCCTTTCATGTCAAATGGTTCTTTGCAAGACAGACTCTATGGGGAACCCGCAAAGAGAAAAATATTAGACTGGCCAACTAGACTCTCTATTGCTCTTGGTGCAGCTCGAGGTTTGGCATATCTTCACACATTTCCAGGACGTTCAGTAATACACAGGGATGTGAAATCAAGCAATATACTTCTAGATCATAGCATGTGCGCTAAGGTTGCCGATTTTGGTTTCTCAAAATATGCTCCTCAGGAAGGAGACAGTAACGTTTCTCTTGAAGTCAGAGGAACTGCAGGGTACCTGGATCCTGAATACTACAAAACTCAACAATTATCTGAGAAGAGTGATGTCTTCAGCTATGGTGTGGTTTTACTTGAAATTCTGACTGGGAGGGAACCTCTTGACATAAAGAGACCACGGAATGAGTGGAGCTTGGTTGAATGGGCTAAGCCATATATACGAGCATCAAAGATGGAAGAAATTATGGATCCTGGCATCAAGGGCGGATACCATGCAGAGGCAATGTGGAGAGTGGTGGAAGTAGCACTGCAATGTCTTGAACCCTTCTCAGAATATAGACCAAGCATGGTGGCCATTGTCCGTGAGTTAGAGGATGCGCTCATCATAGAAAACAATGCATCAGAATACATGAAGTCCATTGACAGCCTTGGAGGATCCAACCGCTACTCTATTGTCATAGAGAAAAGGGTGCTGCCCTCAACTTCATCAACAGCAGAATCAACCATCACAACCCAAGCCTTGTCCCATCCTCAGCCGAGATAG 2763 0.4097 MMELPEIWVLKLVVACAFCLHIFIISVSGSATEGFENIACCADSNYTDPQTTLNYTTDYTWFPNRGSCRRHEIGLNEKVRLFSIDEGKRCYNLPTIKNKVYLIRGTFPFDSINSSFNVSIGATQLGAVRPSTPQDLEIEIEGVFRATKDYIDFCLVKGEVDPFISQLELRPLPEDYLHDLPASVLKLISRNSLWDTKDEIRFPDDPSDRMWKATSSPSSALPLSYNVKNFELKSNMTPPLRVLQTALTHPERLEIHSSLDTEDYEYRVFLYFLELNSTVKEGKRVFDIYVNSKIQRENFDILARGSNYTYTVLNVSANGLLNLTLVKTSGAEFGPLLNAYEILQMRSWIEETNQKDVEVIQKIREELLLQNQNTKVLESWTGDPCIFPWHGIECDGSNGSSVITKLDLSSSNFKGPIPSTVTGMTNLKILNLSHNNFNGYIPSFPPSSLLISIDLSYNDLMGSLPESIVSLPYLKSLYYGCNKRMTEDTPANLNGSLINTDDGRCKAKEPRFGQVFVIGAITCGSLLITLAVGIIFVCRYRQKLIPWEGFGGKNYLMETNVIFSLPSKDDFLIKSVSIQTFTLEDIEVATERYKTLIGEGGFGSVYRGTLNDGQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLLGYCNENDQQILVYPFMSNGSLQDRLYGEPAKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSNVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSYGVVLLEILTGREPLDIKRPRNEWSLVEWAKPYIRASKMEEIMDPGIKGGYHAEAMWRVVEVALQCLEPFSEYRPSMVAIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVIEKRVLPSTSSTAESTITTQALSHPQPR* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1100 920 Gene3D Transferase(Phosphotransferase) domain 1 667 880 - -
Vra11g1100 920 Pfam Protein tyrosine and serine/threonine kinase 595 863 IPR001245 GO:0004672|GO:0006468
Vra11g1100 920 PANTHER OS07G0107800 PROTEIN-RELATED 76 881 - -
Vra11g1100 920 CDD STKc_IRAK 597 864 - -
Vra11g1100 920 PANTHER OS05G0525400 PROTEIN 76 881 - -
Vra11g1100 920 SUPERFAMILY L domain-like 370 485 - -
Vra11g1100 920 Gene3D - 195 346 - -
Vra11g1100 920 ProSiteProfiles Protein kinase domain profile. 591 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1100 920 ProSitePatterns Protein kinases ATP-binding region signature. 597 619 IPR017441 GO:0005524
Vra11g1100 920 Gene3D Ribonuclease Inhibitor 352 500 IPR032675 -
Vra11g1100 920 SMART serkin_6 591 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1100 920 Gene3D Phosphorylase Kinase; domain 1 563 666 - -
Vra11g1100 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 713 725 IPR008271 GO:0004672|GO:0006468
Vra11g1100 920 SUPERFAMILY Protein kinase-like (PK-like) 572 863 IPR011009 -
Vra11g1100 920 Pfam Malectin-like domain 42 344 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1100 Vra-Chr11 10455187 10463378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1100 11 870 Receptor kinase-like Gene Family AT1G67720 34.662 4.45e-135 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vra11g1100 Malectin_like 1.4e-46 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1100 - - gmx:100781986 1635.16