Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1099 ATGGCTGAAGCCAATGGCCGCCGTCGTGTTGAAACAGTGATCGACATAAGGAAACCACCCGTGAGCTTCAGCGGGGGTCTTGTGTTTGAGTGCCTGACTTACACAGTGACAAAAAAGGCAAAGGTGGAGGGGAAGTGGTCGAATGAAGAGGTGGATTTGCTGCATGATATAACTAGTTATGCTCCAAAGGGGTGTATCACTGCAGTGATGGGCCCCAGTGGTGCAGGAAAGTCCACTCTTTTGGATGGTCTTGCTGGGAGAATTGCTAGTGGAAGCCTTAAAGGGAAGGTCTCCTTGGATGGTGCAACTATGAGTGCAAGTTTGATCAAAAGAACTTCTGCATATATCATGCAGGAAGATAGGCTTTTCCCTATGCTAACTGTCTATGAGACTTTCATGTTTGCTGCCGATTTCCGCCTTGGACCACTCTCACTTGCCGATAAGAAACTCAGAGTGGAGAACCTCATTAACCAGCTTGGCTTAACGTCATCTCGGAACACCTACATAGGAGATGAAGGGACAAGAGGAGTGTCCGGCGGAGAGAGGCGGCGCGTCTCAATCGGCGTGGACATCATCCACGGCCCATCACTTCTCTTTCTGGACGAGCCAACCTCAGGGCTAGACTCTACCAGCGCCCACAGCGTGATCGAGAAAGTGCACGACATCGCACGCAGCGGCAGCACCGTCATCCTCACCATCCACCAGCCCTCGTCCAGAATCCAACTCCTCCTCGACCACCTCATCATCCTCGCACGGGGCCAGCTCATGTTCCAAGGGTCGCCGCAAGACGTGGCCCTCCACTTGTCACGCATGCCACGCAAAGTCCCCAAGGGAGAGAACCCCATTGAAAGTCTCATTGACGTGATCCAAGAGTACGATCAGAGTGAGGTTGGAGTTGAAGCACTTGCAGAATTTGCACGCACTGGGGTGAAACCACCTCCTTTGTCCAACCAGCCCCACTCAGTGTCCCCTGTTGCACCCTCTTATGCCAATTTCTCTCACCTTAGCCACAGGTTTGAGGAGAAATCTTTGGAGTTTTCGCAGGCGAGTAGAAGGGCAGTGGACGGTTTTGATCACAGTCTCAGAAGTCCCTATAACAACACTTCCATGTCGTGGAGCACTGGGAATAGTGCAGCATTTCTCAAGTTCACACCAGCACGTCTTAAGAATGATCACAAGCCCCACAATAACACAAGAAAAAATGCTTCACCTGGCTACTACACATACTCGAGTGAAATCTTTCAAGCCACTCCAACACCCCACAGCAGTGACTACGCAGTGAATGAGAATGACTACCTCACTCCCTCAAATGGCACAAAAGAACACCTTGGCCCAAAGTTTCAAAATTCTTACATAACAGAGATATGGATACTCATTCGCCGCAACTTCATAAACATAAGGCGCACCCCTGAGCTTTTCCTCTCAAGACTCATGGTTCTCACCTTCATGGGCTTCATGATGGCCACCATGTTCCACAACCCTAGAAAAGATTTGCAAGGAATCACCAACCGCCTCAGCTTCTTCATCTTCACAGTCTGCCTCTTCTTCTTCTCTTCCAACGATGCTGTCCCAGCCTTCATCCAGGAAAGGTTCATCTTCATACGGGAAACTTCTCACAATGCCTATAGAGCTTCCACTTACACCATTGCAGGCATCATCACTCACATGCCATTCATTCTTCTCCAAGCAGCTGCCTATGCAGGCATTGTTTGGTTTGCCCTAAAACTCCGAGGCCCTTTTCTTTACTTCTTGCTTGTTCTATTCGTTTCTCTTCTGTCAACAAATTCATTCGTTGTGTTTGTGAGCTCAGTGGTGCCAAACTACATATTGGGTTATGCTATGGTTATTGCCTTCACTGCCTTGTTCTTCTTGTTCTGTGGATACTTCTTGAGCGGCCATGACATTCCTCGTTACTGGCGTTGGATGAACACAATTTCAACGATGACATACCCTTATGAGGGGCTGTTGATGAACCAGTACCAGGTCAACGATACGTTTGGATATATAGATGGAGTACCCATTACCGGTTTTCAGATCTTGGAAAGTCTACATATCAAGACTGATGGAAGTAGGAAGAGGACAGTGGTGCTTATAATGTTTGGTTGGGCTGTGCTATACAGGATTTTATTTTACCTAGTCCTTCGTTTTGCATCGAAAAACCAGAGGTCGTAG 2172 0.4839 MAEANGRRRVETVIDIRKPPVSFSGGLVFECLTYTVTKKAKVEGKWSNEEVDLLHDITSYAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVSLDGATMSASLIKRTSAYIMQEDRLFPMLTVYETFMFAADFRLGPLSLADKKLRVENLINQLGLTSSRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSAHSVIEKVHDIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGSPQDVALHLSRMPRKVPKGENPIESLIDVIQEYDQSEVGVEALAEFARTGVKPPPLSNQPHSVSPVAPSYANFSHLSHRFEEKSLEFSQASRRAVDGFDHSLRSPYNNTSMSWSTGNSAAFLKFTPARLKNDHKPHNNTRKNASPGYYTYSSEIFQATPTPHSSDYAVNENDYLTPSNGTKEHLGPKFQNSYITEIWILIRRNFINIRRTPELFLSRLMVLTFMGFMMATMFHNPRKDLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASTYTIAGIITHMPFILLQAAAYAGIVWFALKLRGPFLYFLLVLFVSLLSTNSFVVFVSSVVPNYILGYAMVIAFTALFFLFCGYFLSGHDIPRYWRWMNTISTMTYPYEGLLMNQYQVNDTFGYIDGVPITGFQILESLHIKTDGSRKRTVVLIMFGWAVLYRILFYLVLRFASKNQRS* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1099 723 Pfam ABC-2 type transporter 454 660 IPR013525 GO:0016020|GO:0140359
Vra11g1099 723 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 27 277 IPR003439 GO:0005524
Vra11g1099 723 CDD ABCG_EPDR 27 259 - -
Vra11g1099 723 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 9 717 - -
Vra11g1099 723 Gene3D - 39 272 IPR027417 -
Vra11g1099 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 265 IPR027417 -
Vra11g1099 723 SMART AAA_5 63 261 IPR003593 -
Vra11g1099 723 Pfam ABC transporter 54 205 IPR003439 GO:0005524
Vra11g1099 723 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524
Vra11g1099 723 PANTHER ABC TRANSPORTER G FAMILY MEMBER 19 9 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1099 Vra-Chr11 10445532 10450827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1099 47 333 Calmodulin-binding Proteins AT2G36910 25.338 1.49e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1099 K05681 - gmx:100804809 1201.04