Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1095 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAGCTGCTTGCTCCAAGAAAAGACACTTGGAGTGCTTTGTCTACTGGGTTGAATGAATTGCTCCCTAGTGCTTGGAGCTTTGACTCTTTTGATGAGAACCAGGGTTTAGCAACTTTGAATCCTTCATTTGCTGCATTTTCAACCCCACTAGACCACAGGTTTGAATGTCCTTATGCAAGTGAAGAAACCCACCCTTTTGTTGATGAGTTCTCATTGCCAGAGCTTGAATCATTATACACCAGAAATGATGAGTCAGCACCAGTTCTCCCACAAGAAGATAACCCATCATTGGAGGATGAAGAGTTTGGCTTTCTGGGAAGTGATAACCAGAGTTTGGAGCAAGCAAAAAATGGCTGCAAAATTGAGGAACAGTTGACAGAGATTCCAGTCTTCAACGTGGGTTTGTGTGCAGAGAAAAAGCTCAAATCCAAAAAGCTGGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGAAGAAGAAAGCGTTTGAATGACCGTCTTTCCATGTTAAGGTCAATAGTCCCGAAGATTAGCAAGATGGACAGGACCTCCATTCTCGGAGACACCATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGTAAGTTGCAAGAAGAAGAAATGGAGGAGGGAACAAATCATATAAACCTTTTGGGCAATTCTAAGGAGCTAAAGCCAAATGAAGCAATGTTTGATGTTGAGAGAAGACAGCATGACACAAGGATTAGCATCTGCTGTGCCACAAAGCTAGGATTACTCCTGTCCACAGTGAATACCCTAGAAGCATTAGGCCTTGAGATTCATCAGTGTGTTATAAGCAACTTCAATGATTTTTCAATGCAAGCAACCTGCTCTGAGGCAGCTGAGCAGAGAAATTGTACGAGCCCGGAAGATATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGAAGATGTCTGTAA 978 0.4264 MELSQLGFLDELLAPRKDTWSALSTGLNELLPSAWSFDSFDENQGLATLNPSFAAFSTPLDHRFECPYASEETHPFVDEFSLPELESLYTRNDESAPVLPQEDNPSLEDEEFGFLGSDNQSLEQAKNGCKIEEQLTEIPVFNVGLCAEKKLKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMEEGTNHINLLGNSKELKPNEAMFDVERRQHDTRISICCATKLGLLLSTVNTLEALGLEIHQCVISNFNDFSMQATCSEAAEQRNCTSPEDIKQALFRNAGYGGRCL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1095 325 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 325 - -
Vra11g1095 325 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Vra11g1095 325 PANTHER TRANSCRIPTION FACTOR BHLH61-RELATED 2 325 - -
Vra11g1095 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 219 IPR036638 GO:0046983
Vra11g1095 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Vra11g1095 325 Gene3D - 149 223 IPR036638 GO:0046983
Vra11g1095 325 SMART finulus 164 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1095 Vra-Chr11 10367847 10369851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1095 149 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.416 8.33e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra11g1095 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1095 - - gmx:100806571 566.614