Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1092 ATGTCGCCGCCGGCGGTGGTAGCGGAAGAGGATGGGCTGAGCAAGGTGTCGTCGACTGTAGCGTCTGGTTCTTCGCAGTCCTTGGATTGTTTCTCTCAGAATGGGGCTGGATTGAAAGAAAGGAATTACTTAGGGTTGTCTGATTGCTCATCAGTGGATAGCTGTGCATCTACTGTGCCAGGCTTGGGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACGGAGTTGAGGCTGGGTCTTCCCGGGTCACAGTCACCTGAAAGGGATCCCGATCTTTTCTCTTTAAGCTCAGCAAAGCTCGACGAGAAGCCACTGTTCCCTTTAGTTCCTACTAAAGACGGGATTTGCTTGTCGTCCCAGAAAACTGTTGTTTCCGGCAACAAGAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTTACTGGTAATACGGGGATGAACGCAATGCTGTCACCTAGGCCTTCTTGTGCTCAGCCTTCTGCAATGAAAGAAATTCCAAGCAAGTTGCAAGAACGGCCTTGTTCAGCTAATAATGGAACCGGTCATAACCATACAGGTGCTTCTATAAGTGGCAGTGCACCGGCTTCTAAGGCACAGGTTGTCGGTTGGCCTCCTATAAGATCGTTTAGGAAAAACTCCATGGCCACTACATCCAACAAGAACAATGATGAAGTGGATGGAAAACCAGGTGGTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAAGTAGATCTAAGAAGTTATTCAACATATCAGGAGCTATCTTCTGCTCTTGAGAAAATGTTCAGCTGTTTTACCTTAGGTCAGTGTGGTTCCCATGGAGCTCCCGGAAGAGAAATGTTGAGTGAGAGTAAGCTGAGGGATCTTCTGCACGGTTCAGAGTATGTCGTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCCTGGGAAATGTTCATTGATACTTGCAAAAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGACTTGA 1074 0.4739 MSPPAVVAEEDGLSKVSSTVASGSSQSLDCFSQNGAGLKERNYLGLSDCSSVDSCASTVPGLGDEKKENMNLKATELRLGLPGSQSPERDPDLFSLSSAKLDEKPLFPLVPTKDGICLSSQKTVVSGNKRGFADTMDGFSQGKFTGNTGMNAMLSPRPSCAQPSAMKEIPSKLQERPCSANNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTSNKNNDEVDGKPGGGALFVKVSMDGAPYLRKVDLRSYSTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVVTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRT* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1092 357 MobiDBLite consensus disorder prediction 175 199 - -
Vra11g1092 357 Gene3D - 234 351 - -
Vra11g1092 357 MobiDBLite consensus disorder prediction 1 26 - -
Vra11g1092 357 Pfam AUX/IAA family 75 348 IPR033389 -
Vra11g1092 357 SUPERFAMILY CAD & PB1 domains 234 338 - -
Vra11g1092 357 ProSiteProfiles PB1 domain profile. 237 341 IPR000270 GO:0005515
Vra11g1092 357 PANTHER AUXIN-INDUCED PROTEIN 13 350 - -
Vra11g1092 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 350 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1092 Vra-Chr11 10322640 10327203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1092 239 342 B3 DNA Binding Superfamily AT5G37020 32.692 5.69e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vra11g1092 AUX_IAA 1.4e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1092 K14484 - gmx:547502 664.84