Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1079 ATGAATCTCTGGACCGACGATAACTCCTCTGTTATGGAGGCCTTCATGTCCTCCTCCGATCTCTCCTCCATATGGCCTCCGCCGGCGCCGCCGCAATCCACCGCCGTCTTCAACCAGGACACCCTCCAGCACCGCCTACAGGCCCTCATCGAGGGCGCTCGAGAGAGCTGGACCTACGCTATCTTTTGGCAGTCCTCCTACGACTATTCCGGCTCCACGCTCCTTGGCTGGGGCGACGGTTACTACAAAGGCGACGATGACAAGGCCAAGGCCAAGGCCAAAGCTAAAGCCACCTCCGCCGCCGAGCAGGACCACCGCAAGAAGGTCCTCCGCGAGCTCAACTCCCTCATCTCCGGCTCTTCCGCCACCGCCTCCGACGACGTAGACGAGGAGGTCACAGACACCGAGTGGTTCTTCCTTGTCTCCATGACCCAGTCCTTCGTCAACGGCGCCGGCTTGCCCGGCCAGGCCTTCTTCAATTCCAACCCCGTCTGGGTCACCGGCGGCGACCGCCTCTCCGCCTCCCCCTGCGAGAGAGCCCGCCAGGGACAAGTCTTCGGCCTCCAAACCCTAGTCTGCATACCCTCCGCAAACGGCGTCGTTGAACTGGGGTCTACCGAATTAATTTACCAGAACCCGGATCTGATGAACAAGGTCAAGGTCCTCTTCAATTTTAGCAACAACAACTTCGATATGGGTTCTTCTTGGCCTGCTACCAGCGCCGATCAAGGAGAAAACGACCCCTCCACGCTCTGGCTCAACGATCCTGAAGTTAGGGATTCCATTAACACTGTCGCAGCTACCCCTTCTGTATCCGTTTCTGTTCCCCCTCATAACAGTACTCACGGGATTTCAAAGACGATGCAGTTGGAGAGTTCTATTCAAACCCCCGGTTCCAGTACCTTAACTGAAACCCCAAGCTCTATCCACGCTGTTCCACAGAACCAGAGCGTGTTCTCCAGAGAATTGAACTTCTCTGAGTACTCTTTTGACCCCAAGAGTGGCAACACTAACAATCAGCATTCCCTGAAGCCCGAATCCTGCGAGATTCTCAGCTTCAGCGATAGCAAGAGAACCTCTTACGGGGGCGGGGGCGGGGGCGGGGGCGGTGCCGTCAATGGTAATTCCAATTCCAATTCAAATTTCTTCTCTGGTCAATCACCGTTTGTTGCTGTTGCGGATGAGAACAACAATAACAACAACGGGAAGAGAAGGTCGCCGAATTCGCGAGGCAGCAACGACGACGGAATGCTTTCGTTCACCTCCCGCGCGATTCTTCCGGCCACTAATTTGAAGTCTGCCGGTGGCGGCGATTCCGACCACTCGGATCTGGAAGCGTCGGTGGTAAAGGACCCTGTGGTGGAGCCGGAGAAGCGGCCCCGGAAGAGAGGGCGGAAGCCGGCGAACGGAAGAGAGGAACCATTAAACCACGTGGAAGCGGAGAGGCAGAGGAGGGAGAAGCTGAATCAGAGGTTCTACGCGCTTCGTGCTGTGGTTCCCAACGTGTCCAAGATGGACAAAGCGTCGCTTCTGGGTGACGCAATATCTTACATTACGGAGCTGAAGTCCAAGCTTCAAACTCTGGAATCAGATAAAGATGGGTTGCAGAAGCAACTTGAAGGAGTGAAGAAGGAACTCGAGAAATCAAGCGACAACGTTAATTCTAATCACATGAAACACGCGGGTAATAGTAACATTAAGTCCGCTAATCAGGCGTTGATTGACTTGGACATCGACGTGAAGATTATTGGGTGGGACGCGATGATAAGGATCCAATGCAGCAAGAAGAACCACCCCGCGGCGAGGTTGATGGCGGCGCTGATGGAGTTAGACTTGGACGTTCACCACGCCAGCGTGTCGGTGGTTAACGATTTGATGATCCAACAAGCGACGGTGAAGATGGGGAGTAGGTTTTACACGCAGGAGCAGCTTCGTTCGGCCCTGTCGGCTAAGGTTGGGGATGTACGATGA 1971 0.5505 MNLWTDDNSSVMEAFMSSSDLSSIWPPPAPPQSTAVFNQDTLQHRLQALIEGARESWTYAIFWQSSYDYSGSTLLGWGDGYYKGDDDKAKAKAKAKATSAAEQDHRKKVLRELNSLISGSSATASDDVDEEVTDTEWFFLVSMTQSFVNGAGLPGQAFFNSNPVWVTGGDRLSASPCERARQGQVFGLQTLVCIPSANGVVELGSTELIYQNPDLMNKVKVLFNFSNNNFDMGSSWPATSADQGENDPSTLWLNDPEVRDSINTVAATPSVSVSVPPHNSTHGISKTMQLESSIQTPGSSTLTETPSSIHAVPQNQSVFSRELNFSEYSFDPKSGNTNNQHSLKPESCEILSFSDSKRTSYGGGGGGGGGAVNGNSNSNSNFFSGQSPFVAVADENNNNNNGKRRSPNSRGSNDDGMLSFTSRAILPATNLKSAGGGDSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQTLESDKDGLQKQLEGVKKELEKSSDNVNSNHMKHAGNSNIKSANQALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRSALSAKVGDVR* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1079 656 Coils Coil 518 552 - -
Vra11g1079 656 MobiDBLite consensus disorder prediction 443 482 - -
Vra11g1079 656 MobiDBLite consensus disorder prediction 359 418 - -
Vra11g1079 656 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 42 223 IPR025610 -
Vra11g1079 656 MobiDBLite consensus disorder prediction 371 418 - -
Vra11g1079 656 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 472 521 IPR011598 GO:0046983
Vra11g1079 656 PANTHER TRANSCRIPTION FACTOR MYC2 31 652 - -
Vra11g1079 656 Gene3D - 464 553 IPR036638 GO:0046983
Vra11g1079 656 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 475 541 IPR036638 GO:0046983
Vra11g1079 656 Pfam Helix-loop-helix DNA-binding domain 476 521 IPR011598 GO:0046983
Vra11g1079 656 PANTHER MYC 31 652 IPR045084 GO:0003700|GO:0006355
Vra11g1079 656 MobiDBLite consensus disorder prediction 430 482 - -
Vra11g1079 656 CDD bHLH_AtAIB_like 469 545 - -
Vra11g1079 656 SMART finulus 478 527 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1079 Vra-Chr11 10091919 10094540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1079 1 653 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.307 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra11g1079 bHLH-MYC_N 5.6e-56 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1079 K13422 - gmx:100790168 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1079 11 10091919 10094540 Vra11g1079 11 10091919 10094540 ECH