Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1078 ATGGATTCAGATGCTTCATATGACAAGAACAATGTCTTTCGGAAACTCAAGGCAAAGTCTGAAAACAAGATGTGTTTCGATTGTAATGCAAAAAATCCAACTTGGGCATCCGTCACCTATGGGATCTTCCTCTGCATCGATTGTTCCGCTGCACATCGCAGTCTCGGTGTCCATGTCAGTTTTGTCAGATCAACAAACTTAGACATGTGGAGTCGAGAGCAATTGAAAACCATGATCTTGGGAGGAAACAACCGTGCGCGAAATTTCTTTAAGCAGCATGGTTGGACTAATGGTGGTAAAGTAGAGGCCAAATATACATCAAGAGCTGCAGAGTTATATAGACAAATTCTTTCTAAGGAAGTAGCTAAAAGTATGACAGATAAGGAGGTAGATTCACCATCATCACCTACTGCTTCTCAGTTTGAACAAGTTGTTGAAGAACTTCCTCGAGTAAAGACTAATGAATCACCAAACGAAAATGCTTCACACACAACAATTTCTAATACTGTCAGAAAACCTATTTCTGCTAAAAAAACAAAAAAAGCTGTGGGACTTGGTGCTAGAAAGCTTACTAGAAAGTCATGTGAGAATCTGTACGAGCAAAAACCAGAAGAACCACCAACCGCAGCAAAAAAGCATACACTTTCAGGGTCATCATCTACATCACGATTTGAGTATATAGAAAATGACCAATCATTTGATTTGAATTCTAAAGGTAAGGGTCGCTTAGCAAGGCATGTATCCTTACCAGAGTCATCAAGCGTCTTTGCAGACTTCTTAATGGATAGTGGTTCTCCAAAGGAATTTGGGTCAAATTCATCAAAAGACAAAATTGAGGAGTCCAACGAAGCAAGAAGGAAATTCTCAAATGCTAAATCAATTTCTTCCTCTCAATTTTTTGGAGATCAAAACAAAGATGCAAATGATTCAAAAGTTATCCTCTCAAAATTTTCAGATTCAACTTCCATTTCTAGTGCCGATCTTTTTGGTAACTCTTCCAATGTTGATGTTGATGCTAATGACCTCCTTAATAGACTATCTTTCCGTGCTTATGAAGACATTTCTTCTCTCAGAAATATGGCAGGTGAGACTGGGAAGAAACTCAGTTTCTTGGCTTCCAATCTGATAACAGATATTCAGGATAGAACAATTTAA 1155 0.3827 MDSDASYDKNNVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAAHRSLGVHVSFVRSTNLDMWSREQLKTMILGGNNRARNFFKQHGWTNGGKVEAKYTSRAAELYRQILSKEVAKSMTDKEVDSPSSPTASQFEQVVEELPRVKTNESPNENASHTTISNTVRKPISAKKTKKAVGLGARKLTRKSCENLYEQKPEEPPTAAKKHTLSGSSSTSRFEYIENDQSFDLNSKGKGRLARHVSLPESSSVFADFLMDSGSPKEFGSNSSKDKIEESNEARRKFSNAKSISSSQFFGDQNKDANDSKVILSKFSDSTSISSADLFGNSSNVDVDANDLLNRLSFRAYEDISSLRNMAGETGKKLSFLASNLITDIQDRTI* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1078 384 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Vra11g1078 384 MobiDBLite consensus disorder prediction 128 142 - -
Vra11g1078 384 MobiDBLite consensus disorder prediction 124 143 - -
Vra11g1078 384 SUPERFAMILY ArfGap/RecO-like zinc finger 10 125 IPR037278 -
Vra11g1078 384 MobiDBLite consensus disorder prediction 199 223 - -
Vra11g1078 384 Pfam Putative GTPase activating protein for Arf 11 108 IPR001164 GO:0005096
Vra11g1078 384 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Vra11g1078 384 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 383 - -
Vra11g1078 384 MobiDBLite consensus disorder prediction 266 286 - -
Vra11g1078 384 CDD ArfGap_ArfGap2_3_like 8 123 - -
Vra11g1078 384 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 383 - -
Vra11g1078 384 MobiDBLite consensus disorder prediction 272 286 - -
Vra11g1078 384 MobiDBLite consensus disorder prediction 154 173 - -
Vra11g1078 384 MobiDBLite consensus disorder prediction 149 187 - -
Vra11g1078 384 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Vra11g1078 384 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vra11g1078 384 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Vra11g1078 384 Gene3D Arf GTPase activating protein 1 140 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1078 Vra-Chr11 10073075 10076805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1078 13 91 C2H2 Transcription Factor Family AT4G21160 45.000 4.98e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1078 K12493 K11855 gmx:100789796 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1078 11 10073075 10076805 Vra11g1078 11 10073075 10076805 ECH