Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1069 ATGGCTACTTTAGAATCTGCCCTCACCTTGTTCGCACCTCAACGATTTTCGGATAATTATCGTTCGTCTGCAAAACCACCTTACTCCATTAAGCTTCATACTTCCTCTTCCCTTTTCTTCTCTTCCAAGGCCTCTTTCAAATCTGCAAGACTCTGCTTTCAGCTATGCTCTGCTCTGCAAGAGCTACCCACAACAGAGAAAACACCTGACTCAACCCAACCAACTGACAATCTTACCAAGCTCTACGTATCTAACTTGCCTTGGACTCTGTCGCCGGCCGACATCAAGAACCTTTTTGCCCAATGCGGACCTGTAACCGACGTCGAGATAATAAGGAACAAAAAAGGGAGGCACATGGGATATGCCTTCGTCACTATGGATTCCGGGGAAGAGGCTCAGGCTGCCCTTGATAAATTTGATACATATGAATTATCAGGACGGATAATAAGGGTAGAGTTTGCAAAGCAATTGAATAAACCTCCTCCTTCTTCTTCTCCTCCTCCACCTTCTTCAAGTCGTCGCAATCCTAGAGAGACACGACATGTACTTTATGTATCCAACCTTACATGGAAAGCAAGATCTACCCATCTCAGGCAAGTCTTCACTGAAAATTTCAAAACACCAGTTTCAGCCAGGGTTGTCTTTGACAGCCCTTCTAAACGATCAGCTGGGTACGGATTTGTTTCTTTTCTTACGAAGGAGGATGCAGAGGCTGCCATTTCTGCTGTGGACGGGAAGGAGTTAATGGGACGACCCCTTCGCCTAACATTCAGTGAAAAGAAGGATAAGGAAGCTGGAGGTGGAAAAGAGGAAGATCAAATTAAAGATGCTGGAATTGAAGATGAAGACCAAAGTTCTGATGCTCAACCAGAAGAGTCATAA 882 0.449 MATLESALTLFAPQRFSDNYRSSAKPPYSIKLHTSSSLFFSSKASFKSARLCFQLCSALQELPTTEKTPDSTQPTDNLTKLYVSNLPWTLSPADIKNLFAQCGPVTDVEIIRNKKGRHMGYAFVTMDSGEEAQAALDKFDTYELSGRIIRVEFAKQLNKPPPSSSPPPPSSSRRNPRETRHVLYVSNLTWKARSTHLRQVFTENFKTPVSARVVFDSPSKRSAGYGFVSFLTKEDAEAAISAVDGKELMGRPLRLTFSEKKDKEAGGGKEEDQIKDAGIEDEDQSSDAQPEES* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1069 293 CDD RRM_SF 81 152 - -
Vra11g1069 293 MobiDBLite consensus disorder prediction 155 178 - -
Vra11g1069 293 Gene3D - 54 159 IPR012677 -
Vra11g1069 293 Gene3D - 160 275 IPR012677 -
Vra11g1069 293 MobiDBLite consensus disorder prediction 256 293 - -
Vra11g1069 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
Vra11g1069 293 SUPERFAMILY RNA-binding domain, RBD 71 178 IPR035979 GO:0003676
Vra11g1069 293 SMART rrm1_1 182 256 IPR000504 GO:0003723
Vra11g1069 293 SMART rrm1_1 80 152 IPR000504 GO:0003723
Vra11g1069 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 254 IPR000504 GO:0003723
Vra11g1069 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 149 IPR000504 GO:0003723
Vra11g1069 293 PANTHER OS02G0815200 PROTEIN 13 273 - -
Vra11g1069 293 PANTHER CHLOROPLAST, PUTATIVE-RELATED 13 273 - -
Vra11g1069 293 MobiDBLite consensus disorder prediction 256 282 - -
Vra11g1069 293 SUPERFAMILY RNA-binding domain, RBD 160 264 IPR035979 GO:0003676
Vra11g1069 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1069 Vra-Chr11 9943498 9947040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1069 70 262 Eukaryotic Initiation Factors Gene Family AT4G34110 28.846 1.72e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1069 - - vra:106777856 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1069 11 9943498 9947040 Vra11g1069 11 9943498 9947040 ECH