Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1068 ATGACTTCTCTTGGCAACCCGAAAAGTTTGGTTCCATACATGAACAACAAAGACTGTTCTCAAGGGTTTTGCAGCTTGTATTGTCCACAGTGGTGTTATGTAATCTACCCTCCTCCTCCTCCCTTCGAATTTCCCGCTGATGATTCAAGTCCAAATTTCTCTCCTCTAGTAATCGCTGTCATTGGGGTCTTGGCCAGTGCTTTTCTTCTTGTGAGTTACTATACCTTAATATCCAAGTACTGTGGCAGCAGAGAATCTTCACAAAGCGAAGATCATGAAGAAAACGTTGAATTGGAAGATGATCACAACCCTTCGCTCCACGAGCCTTGGCATGCTCCAACCATTGGGTTAGACGAGGCTCTGATAAAGTCCATAACAGTTTGCAAGTACAAGAAAGGCGATGGGTTGGTTGAGGTGACAGATTGCCCTGTTTGTCTCAGCGAGTTTGAAGACGATGAAAGTGTTAGACTCTTGCCTAAATGCAGCCATGCTTTTCATCTCCCTTGCATTGACACGTGGCTCAAATCTCACTCCAGTTGCCCTCTATGTCGTGCTAGCATATTCACTTTCAATGCTGGAGCACTTCATGTGGCTACCCCAGTCATAGAATTGGGCCGTGAAACTTCAGAAAACCAACATGCAGATGAACATGTTGCTGTTACTACAAGGGACCGTGATTTGGATGCAGTGGAAGGAGAAGTCTCACACGGTGAAGCAGTTCCGAAGACTGCATTGCGTGCTTTGAGTGATCTAGGAAATTTGAGAGGAAGGCATAGTGTAATCGAGATTAGAGACGAAGAGTATGATTCCATCAGAAGGACAGTTTCCATGGATCATTCATTTCAAAGGGGTAATGGTCTTTCTGTGGCTGATGTTCTCCATTTGAACCAAGAGCGTGAAGGATGTTCCAATGGGGCTGGCCCTTCAAAGGGTTCAAGAGGTGAAAGTAGCAAGTCTAGCCATAGAAGAAGGGTTTTGCATTATGTTTTGAGTCCAATTACAATGAAGAGGTCATTTTCTAGTGGAAGATTCTCCCTTAGCAGAAATGGCAGAGGAAGGCAATGGGTTCTCCCTGTCTGA 1080 0.4491 MTSLGNPKSLVPYMNNKDCSQGFCSLYCPQWCYVIYPPPPPFEFPADDSSPNFSPLVIAVIGVLASAFLLVSYYTLISKYCGSRESSQSEDHEENVELEDDHNPSLHEPWHAPTIGLDEALIKSITVCKYKKGDGLVEVTDCPVCLSEFEDDESVRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNAGALHVATPVIELGRETSENQHADEHVAVTTRDRDLDAVEGEVSHGEAVPKTALRALSDLGNLRGRHSVIEIRDEEYDSIRRTVSMDHSFQRGNGLSVADVLHLNQEREGCSNGAGPSKGSRGESSKSSHRRRVLHYVLSPITMKRSFSSGRFSLSRNGRGRQWVLPV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1068 359 Pfam Ring finger domain 141 184 IPR001841 -
Vra11g1068 359 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 350 - -
Vra11g1068 359 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Vra11g1068 359 SMART ring_2 142 183 IPR001841 -
Vra11g1068 359 SUPERFAMILY RING/U-box 122 189 - -
Vra11g1068 359 CDD RING-H2_PA-TM-RING 141 184 - -
Vra11g1068 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 190 IPR013083 -
Vra11g1068 359 MobiDBLite consensus disorder prediction 299 323 - -
Vra11g1068 359 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 350 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1068 Vra-Chr11 9938713 9940681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1068 6 359 C3H Transcription Factor Family AT5G17600 41.645 5.83e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1068 - - gmx:100792267 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1068 11 9938713 9940681 Vra11g1068 11 9938713 9940681 ECH