Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1067 ATGCAAACAACCAACTATGTCTTCACCCAAATCAAAGCAGAGAACTACAAAGTGCCACCACCGCCACCACTTCCACCACTGCCATCTCTGTCGCACATCACCCCGGCGACTTTGATATTCTCCACCATGGCAGTCGCCGCCTTCTGCTTCATAGGTGTCGGTGTCGTCTACTTCTGCAAGTGCTGTTTCAAGAACATCTCCCCCACTAACACAATCGTTCGTATCTCTCCTCCCGACTCTCCCCACAGAGGCCTCGACCCTTCTCTGCTAAGGATGTTCCCCACGTTCCTCTACGCCACCGTCAAGGATCTCCGCACGGAGAAGAAGTACTCACTCGAATGCGCCATTTGCTTGCTGGAGTTCGACGACGACTGCATTCTGCGTCTCTTAACACCCTGCTGCCACGTTTTCCACCAGGATTGCATCGACTCCTGGCTCCGATCACACAGGACTTGCCCCGTTTGCCGTACGGATCTCGATACTCAGGCAAGTAACACCGACGCGCAGAGACCTGAGCAAAACGAGGAGAATATGGAGCACGAGATAAGCGATCACGTGAGCGTTGATGTGAAAGAAGGCGATGATGGAGACGAGAGACACGGTGATGGTGATGAGGGAGGTTCGATGAATGTGCGCATGCAGCGAGACAAGTTTGCAAGTGCACGTTCACACTCGACGGGGCATTCCATAGTTATGGTTAATGACGACAACGACGATGCTAAATACACTCTGAGATTGCCCCAAGATGTGGCTTTGAAAATTGTAAGAGGGCATCATCACTCCAAGAGTTGTTCTAGTTACAAAGACATGGCAGGGCCTTCTTTTGCACCTTGTAGTAACTGTGGTTATGTTCAAACTCTTCTTCATAGCTCCAGTAATGCTGTAAACAATACTTAA 897 0.5039 MQTTNYVFTQIKAENYKVPPPPPLPPLPSLSHITPATLIFSTMAVAAFCFIGVGVVYFCKCCFKNISPTNTIVRISPPDSPHRGLDPSLLRMFPTFLYATVKDLRTEKKYSLECAICLLEFDDDCILRLLTPCCHVFHQDCIDSWLRSHRTCPVCRTDLDTQASNTDAQRPEQNEENMEHEISDHVSVDVKEGDDGDERHGDGDEGGSMNVRMQRDKFASARSHSTGHSIVMVNDDNDDAKYTLRLPQDVALKIVRGHHHSKSCSSYKDMAGPSFAPCSNCGYVQTLLHSSSNAVNNT* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1067 298 SUPERFAMILY RING/U-box 107 165 - -
Vra11g1067 298 MobiDBLite consensus disorder prediction 162 211 - -
Vra11g1067 298 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Vra11g1067 298 PANTHER RING-H2 FINGER PROTEIN ATL29 22 269 - -
Vra11g1067 298 PANTHER RING FINGER DOMAIN-CONTAINING 22 269 - -
Vra11g1067 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 163 IPR013083 -
Vra11g1067 298 SMART ring_2 114 155 IPR001841 -
Vra11g1067 298 CDD RING-H2_PA-TM-RING 113 156 - -
Vra11g1067 298 Pfam Ring finger domain 113 156 IPR001841 -
Vra11g1067 298 MobiDBLite consensus disorder prediction 172 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1067 Vra-Chr11 9930375 9931503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1067 31 256 Rapid Response to Elicitors AT3G05200 37.238 7.88e-40 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1067 - - vra:106776743 598.586