Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1066 ATGGCTCCTTCTTTCGACACAAACACTCAAACAGTTTGCGTCATGGACGCTTCCGGCCACCTAGGTTTCAACCTCGTCCAGAGACTCCTCCAACGAGGCTACACCGTCCATGCCTCTCTCCAAAAATATGGGGATGAAGACCTATTCAATGGGATTTCCACAGACTCTAATAAGCTCAAGATTTTTCGATCTGACCCATTCGATTACCATAGCATAATCGAGGCACTCCGAGGCTGCTCTGGTTTGTTCTACACGTTCGAACCTCCCCATGACCAACAAAATTATGACGAATACATGGCAGACGTGGAAGTAAGAGCTGCACACAACGTGTTGGAAGCCTGTGCACAGACAGAGACAATGGATAAAGTGGTTTTTACTTCCTCAGCAACAGCAGTAGTTTGGAGAGAGGATCGCAAGAGCATGGAACTGGATCTGGATGAGAGACATTGGAGTGATGTTAATTTCTGTCGTAAATTCAAGTTATGGCACGGTGTGTCGAAGACAATGGCTGAGAAAAGTGCGTGGGCCTTAGCAATGGACAGAGGAGTGAATATGGTGTCCATTAACGCTGGCTTATTGATGACTCATGATCTCACCATCCAACACCCTTACCTCAGAGGAGCTGCTGAGATGTACGAGGATGGTGTTTTCGTCACCGTTGATTTACCTTTCTTGGTGGATGCTCACATCTGCGTATACGAAGAAGTCTCATCCTACGGTCGTTATTTGTGTTTTAATCACATCATCAACACCCAAGAAGACGCCGTTCAGTTAGCTCAGAAGTTGACTCCCGCTGCTGGTTCTTCCTCCTCATCTTCATCCTCCCAATCGCCGCAAAGTGGTGACCTCGGTAAGGGTTTTATCGAACAGAAAATTAGCAACAAGAAGTTGAACAAATTGATGGTAAACTTCGAAGCTTGA 921 0.4625 MAPSFDTNTQTVCVMDASGHLGFNLVQRLLQRGYTVHASLQKYGDEDLFNGISTDSNKLKIFRSDPFDYHSIIEALRGCSGLFYTFEPPHDQQNYDEYMADVEVRAAHNVLEACAQTETMDKVVFTSSATAVVWREDRKSMELDLDERHWSDVNFCRKFKLWHGVSKTMAEKSAWALAMDRGVNMVSINAGLLMTHDLTIQHPYLRGAAEMYEDGVFVTVDLPFLVDAHICVYEEVSSYGRYLCFNHIINTQEDAVQLAQKLTPAAGSSSSSSSSQSPQSGDLGKGFIEQKISNKKLNKLMVNFEA* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1066 306 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 264 IPR036291 -
Vra11g1066 306 PANTHER CINNAMOYL-COA REDUCTASE-LIKE SNL6 5 305 - -
Vra11g1066 306 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 5 305 - -
Vra11g1066 306 CDD FR_SDR_e 12 302 - -
Vra11g1066 306 MobiDBLite consensus disorder prediction 265 283 - -
Vra11g1066 306 MobiDBLite consensus disorder prediction 265 285 - -
Vra11g1066 306 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 14 172 IPR002225 GO:0003854|GO:0006694|GO:0016616
Vra11g1066 306 Gene3D - 4 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1066 Vra-Chr11 9920732 9923367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1066 10 304 Monolignol Biosynthesis Gene Families AT5G58490 31.410 2.94e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1066 - - pvu:PHAVU_002G140100g 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1066 11 9920732 9923367 Vra11g1066 11 9920732 9923367 ECH