Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1064 ATGGGCAAGAAGAAACCCAAGGACCCGCAACAAACCCTTCAAACCGATACCGTTTCATCTTCTTCCAGCATTTTCAACAAGCTCTTCGGCAACGCGCCGGAACATGGCACTGCAACCGCTGCCTCTCTATTTTCCGACGACAACCCCTTTCGGAGAAAACCTGCTCCACTTTCCGACACAACGAACCAAGCTTACATCCCTAACAACGGCAACGCCCAGAACCGCGATGCCGGCGACGAGAAGAAGCGCAAGAAGAACAAAGAGAAAAGCCCAGCCCTTGATCCAGTTTCTGTAACTGAAGTTTTGGAGAAATCGGAGAAGAAGAGGAAAAGCGGTTCCGATGAAGGAAGAGAAGGAGGCCTTGATTTGGGTGCAGAAGCAGATGGGAAAAGAAAGAGGAAAAGGGACGAAGTTGAAAGAGAGTGGGAGGAGAAGAAATATGGGCTCATGGAGGAAGTTCAAAAGGAAGGGATTGAGAATAAAACTGTTGGGAACAAGAGGAAGACGTTGGATGATCCAGCTGATACGATGGTTGCAAAGGAAGGTTTTGATGACGAGAATAAACTTCTGAGGACTGTCTTCGTGGGGAATTTGCCTCTCAAGGTGAAAAAGAAGATTCTGTTGAAGGAGTTTAAAAAGTTTGGTGAGGTCGAGTCTGTGAGGATTCGTTCTGTTCCGATACAAGATACTAAGAAACCTAGAAAGGGAGCCATCCTTGCGAAGAAAATAAATGATGCCGCTGATAGTGTACATGCATACATTGTTTTCAAAACCGAGCAATCGGCACAGGCTTCTTTGTCTCACAACATGTCACTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACATAAAGGGGAAAGTGTTCCTCTTTATGACAACAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTGAAGGATGAAGAGCTTTATCAGTTATTTTGTGGCATATCCAACCTGGAATCAAGTGTAGAAGCTGTCAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCTTATGTGCTATTTAAAACAAAGGAAGCTGCTAAATTTGTTGTTAAGAAAAGGAACTTGAAGCTTCGAGACCGAGAGTTGAGACTCTCTCATGCCAAAGCAGATGCTACCCCATCTAAAAGGTCAAACCCATCCTCAACACAAACTCCTACCCCTTCTAAAAGGCCAAACACATCATCAACACAAGTTCCTGGTACTCCTTCAAAGAAATTTTCTGTGGCTTCACGGTCTCCTTCGAGCAGTGTTAACAGGTCAAACAGAAAAGCCAATGCATCTTATCAGGGTCTACGTGCAACCAAATCAGATGTGCACAAGAAAACCCAACAAGGTGGAGAAAAGCCAAAACAACGCCAGACAAAGAGACCTTCAGTGGCTGCCAGAAAGGCTAAAGCAAATTTGCTCAAAGAGAGTGGTGCACCAAAACAAGCAGGGATAAAACGCAAGCTTGATAGTCGTACTCCAGACAGCACCCTGCGTAATAAGAAAGTAAAAAAGAACAGGTAG 1551 0.4487 MGKKKPKDPQQTLQTDTVSSSSSIFNKLFGNAPEHGTATAASLFSDDNPFRRKPAPLSDTTNQAYIPNNGNAQNRDAGDEKKRKKNKEKSPALDPVSVTEVLEKSEKKRKSGSDEGREGGLDLGAEADGKRKRKRDEVEREWEEKKYGLMEEVQKEGIENKTVGNKRKTLDDPADTMVAKEGFDDENKLLRTVFVGNLPLKVKKKILLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEQSAQASLSHNMSLVEGNHIRVDRACPPRKKHKGESVPLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSVEAVRVVRDPHLNVGKGIAYVLFKTKEAAKFVVKKRNLKLRDRELRLSHAKADATPSKRSNPSSTQTPTPSKRPNTSSTQVPGTPSKKFSVASRSPSSSVNRSNRKANASYQGLRATKSDVHKKTQQGGEKPKQRQTKRPSVAARKAKANLLKESGAPKQAGIKRKLDSRTPDSTLRNKKVKKNR* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1064 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 235 IPR000504 GO:0003723
Vra11g1064 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 376 IPR000504 GO:0003723
Vra11g1064 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 285 IPR000504 GO:0003723
Vra11g1064 516 MobiDBLite consensus disorder prediction 75 91 - -
Vra11g1064 516 MobiDBLite consensus disorder prediction 448 468 - -
Vra11g1064 516 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 45 514 - -
Vra11g1064 516 MobiDBLite consensus disorder prediction 374 516 - -
Vra11g1064 516 CDD RRM1_RBM34 191 281 IPR034220 -
Vra11g1064 516 SUPERFAMILY RNA-binding domain, RBD 185 291 IPR035979 GO:0003676
Vra11g1064 516 MobiDBLite consensus disorder prediction 39 142 - -
Vra11g1064 516 MobiDBLite consensus disorder prediction 385 446 - -
Vra11g1064 516 CDD RRM2_RBM34 303 379 IPR034221 -
Vra11g1064 516 SUPERFAMILY RNA-binding domain, RBD 296 392 IPR035979 GO:0003676
Vra11g1064 516 Gene3D - 187 291 IPR012677 -
Vra11g1064 516 MobiDBLite consensus disorder prediction 100 142 - -
Vra11g1064 516 MobiDBLite consensus disorder prediction 55 74 - -
Vra11g1064 516 PANTHER RNA-BINDING PROTEIN 34 45 514 - -
Vra11g1064 516 MobiDBLite consensus disorder prediction 1 21 - -
Vra11g1064 516 MobiDBLite consensus disorder prediction 490 510 - -
Vra11g1064 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 383 IPR000504 GO:0003723
Vra11g1064 516 SMART rrm1_1 303 379 IPR000504 GO:0003723
Vra11g1064 516 SMART rrm1_1 192 281 IPR000504 GO:0003723
Vra11g1064 516 Gene3D - 297 390 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1064 193 368 Eukaryotic Initiation Factors Gene Family AT1G71770 26.816 7.36e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1064 K14837 - gmx:100784494 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1064 11 9867632 9872544 Vra11g1064 11 9867632 9872544 ECH