Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1061 ATGGGTAGATCACCGTGTCGTGAGGAGATTAGTGGTGTAAAGAAAGGACCATGGACACCAGAAGAAGATGAGAAGCTGATTGATTATATCACCAAACACAGCCATGGCAGTTGGAGAACGCTTCCAAAGCGTGCAGGGCTTAATAGATGTGGTAAGAGCTGCAGATTAAGGTGGACAAACTATCTGAGGCCTGATATAAAGAGAGGCCAATTCACTGAAGAAGATGAGAGAACTATCATCAACCTTCATTCAGTTCTCGGAAACAAATGGTCGAAGATTGCAGCTCATCTTCCAGGGCGAACTGATAATGAGATCAAGAATTATTGGAACACTCACATAAGGAAGAAGCTTCTAAAGATGGGTATTGATCCAGAAACTCACAAGCCAAGGACAGACTTGAATCACCTCATGAGTCTTTCTCAGTTGCTTGGTATGTCAAACTTGAGCAGTGTTATGAATAGTACTTGGGGCAATAACCATCTTGGTTTACAACAAGACATCAATCAGCTAGCCAAAATACAACTGCTGCAAAATCTTTTGCAACTTATGAACAGCAATTCATTTGTTAACATGGGTAACCCTTACCTCTTTGGCAACCCCAACCTCAACCCTTTATTTCTGAACGGCATAAACCCCCTTAAGGAGCCTGTGGTGTTGAGTGGTAGTGAAAGATTTGCTAACCCTAGTGTCTACTCTCAAGCACAAAGCGAGTGCTCCCAGCAACAGGATGTTTCAAAATCATTGGCCATTGCACAAGATCCTGATTACAGCAAAATTAGCAGCACCAACACCTATCATTCACATGAAAATCAAGAAGAAAACCCTCTCCCTGCATTAGTTGCTGCCTCTCCGAGGATGGGAACGCTAAACCCAATGGGCAGTGGCTGTGGTAACTTAGCACAAACGAGCGAAGAGTCACCTTCGAACACATTCTTTGATGATTGGGAGAAGTTGTTTGATGATGAAAGAAGCGGTTCCTATTGGAAAGAGATTCTAGAATTAACATCCACTTCTGCATCACCGATTATGTGGTAG 1035 0.43 MGRSPCREEISGVKKGPWTPEEDEKLIDYITKHSHGSWRTLPKRAGLNRCGKSCRLRWTNYLRPDIKRGQFTEEDERTIINLHSVLGNKWSKIAAHLPGRTDNEIKNYWNTHIRKKLLKMGIDPETHKPRTDLNHLMSLSQLLGMSNLSSVMNSTWGNNHLGLQQDINQLAKIQLLQNLLQLMNSNSFVNMGNPYLFGNPNLNPLFLNGINPLKEPVVLSGSERFANPSVYSQAQSECSQQQDVSKSLAIAQDPDYSKISSTNTYHSHENQEENPLPALVAASPRMGTLNPMGSGCGNLAQTSEESPSNTFFDDWEKLFDDERSGSYWKEILELTSTSASPIMW* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1061 344 CDD SANT 71 113 IPR001005 -
Vra11g1061 344 Gene3D - 14 67 - -
Vra11g1061 344 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vra11g1061 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vra11g1061 344 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vra11g1061 344 PANTHER MYB TRANSCRIPTION FACTOR 1 335 - -
Vra11g1061 344 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vra11g1061 344 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Vra11g1061 344 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vra11g1061 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vra11g1061 344 Gene3D - 70 117 - -
Vra11g1061 344 SMART sant 14 64 IPR001005 -
Vra11g1061 344 SMART sant 67 115 IPR001005 -
Vra11g1061 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 335 - -
Vra11g1061 344 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1061 Vra-Chr11 9833527 9835879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1061 1 333 MYB Transcription Factor Family AT5G16770 47.093 5.06e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra11g1061 Myb_DNA-binding 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1061 K09422 - gmx:100810159 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1061 11 9833527 9835879 Vra11g1061 11 9833527 9835879 ECH