Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1060 ATGTCAGACCGGGGTACCTTCTCCGGTGACTCGGCCGTGGATGCTAAGAGCAAAAAGGAACACAAAGTTTCTCTGCTGAAACTCTTCTCTTTTGCTGACTTCTATGACTGTGTCTTAATGGCCTTTGGATCTGTTGGGGCATGTATACATGGTGCTTCTGTTCCCGTTTTCTTTATCTTCTTTGGCAAGTTGATCAATGTCATAGGCTTGGCCTATCTTTTCCCCAAGGAAGCCTCTCACAAAGTTGCCAAGTACTCTATGGATTTTGTGTATCTAAGTGTAGCAATATTGTTTTCATCTTGGATAGAGGTCGCTTGTTGGATGCATACTGGGGAACGTCAAGCTGCAAAGATGAGAATGGCTTATTTGAAGTCAATGTTGAATCAAGATATAAGTCTATTTGACACTGAAGCATCAACAGGAGAGGTCATTTCCGCCATCACCAGTGACATTATCATTGTTCAAGATGCACTATCCGAAAAGGTGGGGAACTTCATGCACTACATAAGCCGATTTTTAGCAGGGTTTATTATTGGGTTTGTTAGAGTGTGGCAGATAAGTCTTGTGACTCTTTCAATTGTACCTTTGATTGCCCTTGCTGGAGGTCTTTATGCATACGTCACAATTGGCCTTATTGCAAAAGTTCGAAAAGCCTATGTGCGAGCTGGGGAAATCGCTGAAGAGGTGATAGGTAATGTTAGAACGGTTCAAGCATTTGCAGGAGAAGAAAGAGCAGTAAAGTCGTATAAAGCTGCTCTCATGAAAACTTATGTAAACGGTAGAAAAGCAGGTTTGGCAAAGGGCCTGGGCCTGGGCTCAATGCATTGTGTCCTTTTTCTATCGTGGGCTTTGCTTGTTTGGTTCACTAGTATTGTTGTTCACAAGAAAATTGCAAATGGAGGCGAGTCTTTCACTACCATGCTCAATGTTGTGATCTCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATCACTGCATTCATTCGAGCAAAGGCAGCAGCTTATCCAATCTTTGAGATGATAGAGAGGGACACAGTGAGCAAAAGTAGCTCAAAAATTGGTCGCAAGTTAGGCAAATTGGAGGGTGACATCCAGTTTAAGAATGTCTGTTTCAGTTACCCATCTCGTCCAGATGTAGCAATATTCAACAACCTGTGTCTTGACATTCCTTCAGGGAAAATTGTAGCCCTTGTGGGAGGAAGTGGTTCGGGAAAGAGCACTGTCATATCATTGATCGAACGCTTTTACGAACCACTTTCTGGACAGATACTGTTAGACGGAAATGATATCAGGGAACTCGATCTCAAATGGCTTAGGCAGCAAATTGGGCTGGTAAATCAAGAACCTGCCCTTTTTGCTACAAGCATCAAGGAGAATATACTTTATGGAAAAGATGATGCCACTCTCGAAGAACTAAAGCGTGCTGTGAAGCTTTCAGATGCTCAATCTTTCATTAACAATCTTCCTGATAGACTAGAAACTCAGGTTGGTGAGAGAGGAATACAACTCTCAGGAGGGCAAAAACAAAGGATTGCAATATCTCGTGCAATCGTGAAAAATCCATCAATTCTATTGTTGGATGAAGCAACGAGTGCTCTGGATGCTGAGTCCGAGAAGAGTGTGCAGGAGGCTCTTGATCGTGTGATGGTTGGGAGAACAACTGTTGTAGTGGCACACAGACTTTCTACCATCAGGAATGCAGATTTGATTGCTGTTGTACAGGGAGGGAAGATTGTGGAAACCGGTAACCATGAAGAGCTCATGTCTAACCCAAGTAGTGTATATGCATCTCTTGTTCAACTCCAAGAGGCAGCTTCTCTGCAACGCCTCCCTTCAGTTGGTCCTAGCATGGGACGCCAACCAAGCATAACCTACTCGAGAGAGTTATCCCGTACAACCACCAGCCTTGGTGGTAGTTTTCGATCAGATAAAGAATCTATTGGCCGTGTTTGTGCTGAAGAAACAGAAAATTCTGGCAAGAAAAAGTATGTTTCAGCAGCAAGACTGTATTCTATGGTTGGTCCTGACTGGTTTTATGGGGTTTTTGGAACCTTATGCGCATTTATTGCTGGAGCACAGATGCCACTTTTTGCACTTGGAATTTCTCATGCACTTGTATCATACTATATGGACTGGGACATAACATGTCGCGAAGTTAAAAAAATTGCTTTCCTCTTCTGTGGAGCAGCAGTTATAACAGTCACTGTCCATGCCATTGAACATCTGTCTTTTGGAATCATGGGAGAGCGACTTACCCTTCGTGTGAGAGAAATGATGTTTTCAGCTATCTTGAAGAACGAAATTGGATGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCATCGCAGTTAGAGACTGATGCTACATTGTTAAGAACTATAGTCGTTGATCGTTCAACAATTCTGTTACAGAACATTGGTTTGGTTGTTGCTTCATTTATTATTGCCTTCATCTTGAACTGGAGAATAACACTTATTGTCATAGCTACATATCCTTTTGTCATTAGTGGTCATATCAGTGAGAAACTTTTTATGAAAGGATATGGTGGCAACTTGAGCAAAGCATACCTAAAAGCCAACATGCTTGCTGGGGAGGCTGTGAGCAATATACGCACTGTGGCTGCATTTTGTTCTGAAGAAAAGGTCCTTGACCTTTATGCTAATGAGCTTCTTGATCCCTCTAAACGCTCATTTAAACGAGGCCAAATTGCTGGCATATTCTATGGCGTTTCCCAGTTCTTTATTTTCTCATCTTATGGTCTTGCCTTGTGGTATGGATCTACTTTGATGGAAAAGGAGCTTGCAAGCTTTAAATCAATTATGAAGTCATTTATGGTTTTGATAGTAACAGCTCTAGCTATGGGGGAGACTTTGGCCCTTGCCCCGGACCTTTTGAAAGGGAACCAAATGGTTGCATCAGTTTTCGAAGTGATGGATAGAAAGTCAGGAATAACAGGAGATGTTGGAGAAGAATTGAAAACAGTGGAGGGAACAATTGAGCTAAAAAGAATCAATTTCAGCTACCCTTCAAGGTCAGATGTGATTATTTTCAAGGATTTCAACCTAAGAGTTCCCGCAGGCAAGAGTGTTGCTCTAGTGGGGCAAAGTGGTTCTGGTAAAAGCTCTGTGATTTCCCTTATCCTCAGATTTTATGATCCAGTATCCGGAAGGGTGTTAGTTGATGGCAAAGACATCACAAAACTTAATCTGAAATCTCTTAGGAGACACATTGGTCTAGTGCAACAAGAGCCAGCTCTTTTTGCCACATCAATTTATGAAAACATACTGTATGGAAAAGAAGGTGCCTCTGATTCAGAAGTGATTGAAGCAGCCAAGCTTGCCAATGCTCATAACTTCATCAGTGGTCTTCCTGAAGGCTACTCCACCAAAGTAGGTGAAAGAGGAGTGCAACTATCTGGTGGGCAAAGACAAAGGGTAGCCATTGCAAGAGCAGTTCTAAAGAACCCTGAAATCTTGCTTCTTGATGAAGCCACTAGTGCACTTGATGTGGAGTCAGAGCGTGTGGTGCAGCAAGCATTGGACAGATTAATGCAGAACAGAACTACAGTTATGGTGGCACATAGGCTATCCACCATAAGAAATGCAGACCAAATCTCAGTTTTGCAGGATGGAAAGATAATTGAGCAAGGGACTCATTCAAGTCTCATAGAAAATAAAAACGGAGCATACTTTAAACTAGTCAACCTTCAACAACAACAGCATCATCAATTATAG 3738 0.4232 MSDRGTFSGDSAVDAKSKKEHKVSLLKLFSFADFYDCVLMAFGSVGACIHGASVPVFFIFFGKLINVIGLAYLFPKEASHKVAKYSMDFVYLSVAILFSSWIEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFLAGFIIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVKSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKKIANGGESFTTMLNVVISGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTVSKSSSKIGRKLGKLEGDIQFKNVCFSYPSRPDVAIFNNLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGQILLDGNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADLIAVVQGGKIVETGNHEELMSNPSSVYASLVQLQEAASLQRLPSVGPSMGRQPSITYSRELSRTTTSLGGSFRSDKESIGRVCAEETENSGKKKYVSAARLYSMVGPDWFYGVFGTLCAFIAGAQMPLFALGISHALVSYYMDWDITCREVKKIAFLFCGAAVITVTVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLSSQLETDATLLRTIVVDRSTILLQNIGLVVASFIIAFILNWRITLIVIATYPFVISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELLDPSKRSFKRGQIAGIFYGVSQFFIFSSYGLALWYGSTLMEKELASFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGITGDVGEELKTVEGTIELKRINFSYPSRSDVIIFKDFNLRVPAGKSVALVGQSGSGKSSVISLILRFYDPVSGRVLVDGKDITKLNLKSLRRHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENKNGAYFKLVNLQQQQHHQL* 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1060 1245 CDD ABC_6TM_Pgp_ABCB1_D2_like 670 985 - -
Vra11g1060 1245 Gene3D - 990 1245 IPR027417 -
Vra11g1060 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 994 1238 IPR027417 -
Vra11g1060 1245 SUPERFAMILY ABC transporter transmembrane region 27 334 IPR036640 GO:0005524|GO:0016021
Vra11g1060 1245 Pfam ABC transporter 383 531 IPR003439 GO:0005524
Vra11g1060 1245 Pfam ABC transporter 1019 1167 IPR003439 GO:0005524
Vra11g1060 1245 Gene3D - 354 603 IPR027417 -
Vra11g1060 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 329 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra11g1060 1245 Pfam ABC transporter transmembrane region 682 953 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra11g1060 1245 Pfam ABC transporter transmembrane region 45 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra11g1060 1245 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 16 1241 - -
Vra11g1060 1245 Gene3D ABC transporter type 1, transmembrane domain 640 988 IPR036640 GO:0005524|GO:0016021
Vra11g1060 1245 Gene3D ABC transporter type 1, transmembrane domain 27 606 IPR036640 GO:0005524|GO:0016021
Vra11g1060 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1000 1236 IPR003439 GO:0005524
Vra11g1060 1245 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 337 - -
Vra11g1060 1245 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 16 1241 IPR039421 -
Vra11g1060 1245 SUPERFAMILY ABC transporter transmembrane region 662 981 IPR036640 GO:0005524|GO:0016021
Vra11g1060 1245 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524
Vra11g1060 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 681 967 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra11g1060 1245 SMART AAA_5 391 583 IPR003593 -
Vra11g1060 1245 SMART AAA_5 1027 1213 IPR003593 -
Vra11g1060 1245 ProSitePatterns ABC transporters family signature. 1139 1153 IPR017871 GO:0005524
Vra11g1060 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Vra11g1060 1245 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Vra11g1060 1245 CDD ABC_MTABC3_MDL1_MDL2 1000 1235 - -
Vra11g1060 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 602 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1060 Vra-Chr11 9805816 9813259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1060 14 1245 Calmodulin-binding Proteins AT2G36910 50.478 0.0 1220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1060 K05658 - gmx:100819045 2271.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1060 11 9805816 9813259 Vra11g1060 11 9805816 9813259 ECH