Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra11g1060 | ATGTCAGACCGGGGTACCTTCTCCGGTGACTCGGCCGTGGATGCTAAGAGCAAAAAGGAACACAAAGTTTCTCTGCTGAAACTCTTCTCTTTTGCTGACTTCTATGACTGTGTCTTAATGGCCTTTGGATCTGTTGGGGCATGTATACATGGTGCTTCTGTTCCCGTTTTCTTTATCTTCTTTGGCAAGTTGATCAATGTCATAGGCTTGGCCTATCTTTTCCCCAAGGAAGCCTCTCACAAAGTTGCCAAGTACTCTATGGATTTTGTGTATCTAAGTGTAGCAATATTGTTTTCATCTTGGATAGAGGTCGCTTGTTGGATGCATACTGGGGAACGTCAAGCTGCAAAGATGAGAATGGCTTATTTGAAGTCAATGTTGAATCAAGATATAAGTCTATTTGACACTGAAGCATCAACAGGAGAGGTCATTTCCGCCATCACCAGTGACATTATCATTGTTCAAGATGCACTATCCGAAAAGGTGGGGAACTTCATGCACTACATAAGCCGATTTTTAGCAGGGTTTATTATTGGGTTTGTTAGAGTGTGGCAGATAAGTCTTGTGACTCTTTCAATTGTACCTTTGATTGCCCTTGCTGGAGGTCTTTATGCATACGTCACAATTGGCCTTATTGCAAAAGTTCGAAAAGCCTATGTGCGAGCTGGGGAAATCGCTGAAGAGGTGATAGGTAATGTTAGAACGGTTCAAGCATTTGCAGGAGAAGAAAGAGCAGTAAAGTCGTATAAAGCTGCTCTCATGAAAACTTATGTAAACGGTAGAAAAGCAGGTTTGGCAAAGGGCCTGGGCCTGGGCTCAATGCATTGTGTCCTTTTTCTATCGTGGGCTTTGCTTGTTTGGTTCACTAGTATTGTTGTTCACAAGAAAATTGCAAATGGAGGCGAGTCTTTCACTACCATGCTCAATGTTGTGATCTCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATCACTGCATTCATTCGAGCAAAGGCAGCAGCTTATCCAATCTTTGAGATGATAGAGAGGGACACAGTGAGCAAAAGTAGCTCAAAAATTGGTCGCAAGTTAGGCAAATTGGAGGGTGACATCCAGTTTAAGAATGTCTGTTTCAGTTACCCATCTCGTCCAGATGTAGCAATATTCAACAACCTGTGTCTTGACATTCCTTCAGGGAAAATTGTAGCCCTTGTGGGAGGAAGTGGTTCGGGAAAGAGCACTGTCATATCATTGATCGAACGCTTTTACGAACCACTTTCTGGACAGATACTGTTAGACGGAAATGATATCAGGGAACTCGATCTCAAATGGCTTAGGCAGCAAATTGGGCTGGTAAATCAAGAACCTGCCCTTTTTGCTACAAGCATCAAGGAGAATATACTTTATGGAAAAGATGATGCCACTCTCGAAGAACTAAAGCGTGCTGTGAAGCTTTCAGATGCTCAATCTTTCATTAACAATCTTCCTGATAGACTAGAAACTCAGGTTGGTGAGAGAGGAATACAACTCTCAGGAGGGCAAAAACAAAGGATTGCAATATCTCGTGCAATCGTGAAAAATCCATCAATTCTATTGTTGGATGAAGCAACGAGTGCTCTGGATGCTGAGTCCGAGAAGAGTGTGCAGGAGGCTCTTGATCGTGTGATGGTTGGGAGAACAACTGTTGTAGTGGCACACAGACTTTCTACCATCAGGAATGCAGATTTGATTGCTGTTGTACAGGGAGGGAAGATTGTGGAAACCGGTAACCATGAAGAGCTCATGTCTAACCCAAGTAGTGTATATGCATCTCTTGTTCAACTCCAAGAGGCAGCTTCTCTGCAACGCCTCCCTTCAGTTGGTCCTAGCATGGGACGCCAACCAAGCATAACCTACTCGAGAGAGTTATCCCGTACAACCACCAGCCTTGGTGGTAGTTTTCGATCAGATAAAGAATCTATTGGCCGTGTTTGTGCTGAAGAAACAGAAAATTCTGGCAAGAAAAAGTATGTTTCAGCAGCAAGACTGTATTCTATGGTTGGTCCTGACTGGTTTTATGGGGTTTTTGGAACCTTATGCGCATTTATTGCTGGAGCACAGATGCCACTTTTTGCACTTGGAATTTCTCATGCACTTGTATCATACTATATGGACTGGGACATAACATGTCGCGAAGTTAAAAAAATTGCTTTCCTCTTCTGTGGAGCAGCAGTTATAACAGTCACTGTCCATGCCATTGAACATCTGTCTTTTGGAATCATGGGAGAGCGACTTACCCTTCGTGTGAGAGAAATGATGTTTTCAGCTATCTTGAAGAACGAAATTGGATGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCATCGCAGTTAGAGACTGATGCTACATTGTTAAGAACTATAGTCGTTGATCGTTCAACAATTCTGTTACAGAACATTGGTTTGGTTGTTGCTTCATTTATTATTGCCTTCATCTTGAACTGGAGAATAACACTTATTGTCATAGCTACATATCCTTTTGTCATTAGTGGTCATATCAGTGAGAAACTTTTTATGAAAGGATATGGTGGCAACTTGAGCAAAGCATACCTAAAAGCCAACATGCTTGCTGGGGAGGCTGTGAGCAATATACGCACTGTGGCTGCATTTTGTTCTGAAGAAAAGGTCCTTGACCTTTATGCTAATGAGCTTCTTGATCCCTCTAAACGCTCATTTAAACGAGGCCAAATTGCTGGCATATTCTATGGCGTTTCCCAGTTCTTTATTTTCTCATCTTATGGTCTTGCCTTGTGGTATGGATCTACTTTGATGGAAAAGGAGCTTGCAAGCTTTAAATCAATTATGAAGTCATTTATGGTTTTGATAGTAACAGCTCTAGCTATGGGGGAGACTTTGGCCCTTGCCCCGGACCTTTTGAAAGGGAACCAAATGGTTGCATCAGTTTTCGAAGTGATGGATAGAAAGTCAGGAATAACAGGAGATGTTGGAGAAGAATTGAAAACAGTGGAGGGAACAATTGAGCTAAAAAGAATCAATTTCAGCTACCCTTCAAGGTCAGATGTGATTATTTTCAAGGATTTCAACCTAAGAGTTCCCGCAGGCAAGAGTGTTGCTCTAGTGGGGCAAAGTGGTTCTGGTAAAAGCTCTGTGATTTCCCTTATCCTCAGATTTTATGATCCAGTATCCGGAAGGGTGTTAGTTGATGGCAAAGACATCACAAAACTTAATCTGAAATCTCTTAGGAGACACATTGGTCTAGTGCAACAAGAGCCAGCTCTTTTTGCCACATCAATTTATGAAAACATACTGTATGGAAAAGAAGGTGCCTCTGATTCAGAAGTGATTGAAGCAGCCAAGCTTGCCAATGCTCATAACTTCATCAGTGGTCTTCCTGAAGGCTACTCCACCAAAGTAGGTGAAAGAGGAGTGCAACTATCTGGTGGGCAAAGACAAAGGGTAGCCATTGCAAGAGCAGTTCTAAAGAACCCTGAAATCTTGCTTCTTGATGAAGCCACTAGTGCACTTGATGTGGAGTCAGAGCGTGTGGTGCAGCAAGCATTGGACAGATTAATGCAGAACAGAACTACAGTTATGGTGGCACATAGGCTATCCACCATAAGAAATGCAGACCAAATCTCAGTTTTGCAGGATGGAAAGATAATTGAGCAAGGGACTCATTCAAGTCTCATAGAAAATAAAAACGGAGCATACTTTAAACTAGTCAACCTTCAACAACAACAGCATCATCAATTATAG | 3738 | 0.4232 | MSDRGTFSGDSAVDAKSKKEHKVSLLKLFSFADFYDCVLMAFGSVGACIHGASVPVFFIFFGKLINVIGLAYLFPKEASHKVAKYSMDFVYLSVAILFSSWIEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFLAGFIIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVKSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKKIANGGESFTTMLNVVISGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTVSKSSSKIGRKLGKLEGDIQFKNVCFSYPSRPDVAIFNNLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGQILLDGNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADLIAVVQGGKIVETGNHEELMSNPSSVYASLVQLQEAASLQRLPSVGPSMGRQPSITYSRELSRTTTSLGGSFRSDKESIGRVCAEETENSGKKKYVSAARLYSMVGPDWFYGVFGTLCAFIAGAQMPLFALGISHALVSYYMDWDITCREVKKIAFLFCGAAVITVTVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLSSQLETDATLLRTIVVDRSTILLQNIGLVVASFIIAFILNWRITLIVIATYPFVISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELLDPSKRSFKRGQIAGIFYGVSQFFIFSSYGLALWYGSTLMEKELASFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGITGDVGEELKTVEGTIELKRINFSYPSRSDVIIFKDFNLRVPAGKSVALVGQSGSGKSSVISLILRFYDPVSGRVLVDGKDITKLNLKSLRRHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENKNGAYFKLVNLQQQQHHQL* | 1246 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra11g1060 | 1245 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 670 | 985 | - | - | |
Vra11g1060 | 1245 | Gene3D | - | 990 | 1245 | IPR027417 | - | |
Vra11g1060 | 1245 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 994 | 1238 | IPR027417 | - | |
Vra11g1060 | 1245 | SUPERFAMILY | ABC transporter transmembrane region | 27 | 334 | IPR036640 | GO:0005524|GO:0016021 | |
Vra11g1060 | 1245 | Pfam | ABC transporter | 383 | 531 | IPR003439 | GO:0005524 | |
Vra11g1060 | 1245 | Pfam | ABC transporter | 1019 | 1167 | IPR003439 | GO:0005524 | |
Vra11g1060 | 1245 | Gene3D | - | 354 | 603 | IPR027417 | - | |
Vra11g1060 | 1245 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 41 | 329 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Vra11g1060 | 1245 | Pfam | ABC transporter transmembrane region | 682 | 953 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Vra11g1060 | 1245 | Pfam | ABC transporter transmembrane region | 45 | 312 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Vra11g1060 | 1245 | PANTHER | ABC TRANSPORTER B FAMILY PROTEIN | 16 | 1241 | - | - | |
Vra11g1060 | 1245 | Gene3D | ABC transporter type 1, transmembrane domain | 640 | 988 | IPR036640 | GO:0005524|GO:0016021 | |
Vra11g1060 | 1245 | Gene3D | ABC transporter type 1, transmembrane domain | 27 | 606 | IPR036640 | GO:0005524|GO:0016021 | |
Vra11g1060 | 1245 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1000 | 1236 | IPR003439 | GO:0005524 | |
Vra11g1060 | 1245 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 40 | 337 | - | - | |
Vra11g1060 | 1245 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY B | 16 | 1241 | IPR039421 | - | |
Vra11g1060 | 1245 | SUPERFAMILY | ABC transporter transmembrane region | 662 | 981 | IPR036640 | GO:0005524|GO:0016021 | |
Vra11g1060 | 1245 | ProSitePatterns | ABC transporters family signature. | 503 | 517 | IPR017871 | GO:0005524 | |
Vra11g1060 | 1245 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 681 | 967 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Vra11g1060 | 1245 | SMART | AAA_5 | 391 | 583 | IPR003593 | - | |
Vra11g1060 | 1245 | SMART | AAA_5 | 1027 | 1213 | IPR003593 | - | |
Vra11g1060 | 1245 | ProSitePatterns | ABC transporters family signature. | 1139 | 1153 | IPR017871 | GO:0005524 | |
Vra11g1060 | 1245 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 364 | 600 | IPR003439 | GO:0005524 | |
Vra11g1060 | 1245 | CDD | ABC_MTABC3_MDL1_MDL2 | 364 | 602 | - | - | |
Vra11g1060 | 1245 | CDD | ABC_MTABC3_MDL1_MDL2 | 1000 | 1235 | - | - | |
Vra11g1060 | 1245 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 359 | 602 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra11g1060 | Vra-Chr11 | 9805816 | 9813259 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra11g1060 | 14 | 1245 | Calmodulin-binding Proteins | AT2G36910 | 50.478 | 0.0 | 1220 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra11g1060 | K05658 | - | gmx:100819045 | 2271.51 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vra11g1060 | 11 | 9805816 | 9813259 | Vra11g1060 | 11 | 9805816 | 9813259 | ECH |