Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1058 ATGAGAGGGAAACAGCAACGTGGAGCGGAAGACTCGTTCTTCGCTCCAAACGCTTCTGCCGCTCACCACAATTTGGGCTCATCAAACCACCGCAGGCCCACACGTAGGAACCGAGGCTCACACCAACCGAACTTGAAATACCGTGTCGTGAATAAGCCTGAAGCGGTTTCTTCCTTCAACTCTCACTCCGTTGAGGATGTCAACCTGGACGTAACTGTCGCATCCCTAAATCACCATGGCGAGGACGCGGACGGTGCCTACGAGCTTAACACCGTTGACGGCACTGATCGCGTGGCTGGGGAAGAAGGCGGCGATAACGATGATGGTGATGGAGAGGGCGATATTCAGACCAGACTTGATAAGCTGCTCTGTAAAATCGAGGAACCTGATTTGTCCGAGGAGCAGATCAGAATCAATGATCAATTGCAACAAGATGAGATACTTGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCGGCCTTGAGAGATGGAAAGGCTTGCGTTGTTTTCAGATACATATACACATTGATGTTTTGGGTGAAATAGCCATCACTGCTAAGTTGAACTCTCTTAATCAACTTGAGACTGTAAGCAGCAGTTCAGATGAATTCTTATACACTTTCAAAGTCCACTATCTTCCCCCGGTTGTTTTGACTTGTTTATTACCTAAGTCGTACCCTAGCCACCAACCACCTATTTTTACACTCTCTGTTAAGTGGTTGGAACCTGCGAAGATTCTGAGACTGTGTTCCAAGTTGGATTCAATATGGGCTGAACAACAAGGGCAGGAAGTAATTTACCCTTGGGTAGAATGGTTGCATGGTTCTTCTCTTTCTCATCTGGGATTTGATGAAGAAATCACACTTGGGCCTTATGGCATGAATGTTGTCCAGGATGAGCGTGTTGTTTCAGGAGCTGAATGCATTGATATTGATATTCCTTTTTTACGTAATTACAATGATAAGAGACACAATGAGAACTTCCTCAAAGAATTACATCAATGTAACATTTGCTTTGGTGAATATGCAGGTTCTGAGTTTATCCGGTTACCATGTATGCATTTTTTTTGCCTCAAATGCTTGCAGACCTTTGCCCGGATACATGTAAAGGAAGGAACTGTTAGTAATCTTCAATGTCCTGAAGCAAAATGTACAGTCATGATTCCACCTGGCCTTTTAAAACACTTGCTAGATGACAGAGATTATGAGCGCTGGGAATCCATGATGTTGGAAAAAACACTTGCATCAATGTCTGATGTTGTTTATTGTCCAAGATGTGAAACCCCCTGTATAGAGGATGAAGACCAGCATGCTCAATGCCCAAAATGTTATTTTAGTTTTTGTACCCTTTGCAGGGAACGACGCCACGTTGGCATAGCATGCATGAGTCTAGATATGAAGCTTCAGATTTTGCAGGACCGTCAGAATTCATCCCATTTAAAGGAAGATCAAAAACGTAGAGAACGTGAAAAGATTAATGAAATGCTCAGTATGAAAGAAATTCACCGTGATTCCAAGCTATGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAGATGAAATGTGGAAATTGTGAACAATACTTTTGTTACCGCTGCAACAAGGCAATTGATCCATCAGATCCTTATGGTCATTTCAGGGATGGTTCATGTGAGCTGTTCCCAAGAGAAATGGTTGAGTCCTGGCAAGAGCGAATAAATAATCGTCAGGTAGTAGGACAATTACAGGCTGAGCTTTTTCCTCAACGAGGCTTGACATGTCCTAATTGTCGTCAATTTAATGCAAAGATTGGAAACAATAATCACTTGTTTTGCTGGGCATGCCAAAGCCACTACTGCTACTTGTGCAAAGAGATTGTGAGGCGCGGCACCAAGCATTATGGACCCAAGGGCTGCAAACAGCATTCCGAGGGCTAG 1929 0.4349 MRGKQQRGAEDSFFAPNASAAHHNLGSSNHRRPTRRNRGSHQPNLKYRVVNKPEAVSSFNSHSVEDVNLDVTVASLNHHGEDADGAYELNTVDGTDRVAGEEGGDNDDGDGEGDIQTRLDKLLCKIEEPDLSEEQIRINDQLQQDEILVVESIYGENVFGLERWKGLRCFQIHIHIDVLGEIAITAKLNSLNQLETVSSSSDEFLYTFKVHYLPPVVLTCLLPKSYPSHQPPIFTLSVKWLEPAKILRLCSKLDSIWAEQQGQEVIYPWVEWLHGSSLSHLGFDEEITLGPYGMNVVQDERVVSGAECIDIDIPFLRNYNDKRHNENFLKELHQCNICFGEYAGSEFIRLPCMHFFCLKCLQTFARIHVKEGTVSNLQCPEAKCTVMIPPGLLKHLLDDRDYERWESMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMSLDMKLQILQDRQNSSHLKEDQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKAIDPSDPYGHFRDGSCELFPREMVESWQERINNRQVVGQLQAELFPQRGLTCPNCRQFNAKIGNNNHLFCWACQSHYCYLCKEIVRRGTKHYGPKGCKQHSEG* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1058 642 Gene3D Ubiquitin Conjugating Enzyme 132 281 IPR016135 -
Vra11g1058 642 ProSitePatterns Zinc finger RING-type signature. 352 361 IPR017907 -
Vra11g1058 642 SMART RWD2001b 145 280 IPR006575 GO:0005515
Vra11g1058 642 SUPERFAMILY RING/U-box 587 639 - -
Vra11g1058 642 Pfam IBR domain, a half RING-finger domain 498 542 IPR002867 -
Vra11g1058 642 Pfam IBR domain, a half RING-finger domain 403 461 IPR002867 -
Vra11g1058 642 MobiDBLite consensus disorder prediction 28 42 - -
Vra11g1058 642 SUPERFAMILY RING/U-box 494 550 - -
Vra11g1058 642 SMART ring_2 591 620 IPR001841 -
Vra11g1058 642 SMART ring_2 335 382 IPR001841 -
Vra11g1058 642 SMART ring_2 423 511 IPR001841 -
Vra11g1058 642 Pfam RWD domain 141 274 IPR006575 GO:0005515
Vra11g1058 642 SUPERFAMILY RING/U-box 403 465 - -
Vra11g1058 642 Gene3D - 476 583 - -
Vra11g1058 642 ProSiteProfiles RWD domain profile. 145 280 IPR006575 GO:0005515
Vra11g1058 642 MobiDBLite consensus disorder prediction 1 46 - -
Vra11g1058 642 ProSiteProfiles TRIAD supradomain profile. 331 561 IPR044066 -
Vra11g1058 642 SUPERFAMILY UBC-like 139 274 IPR016135 -
Vra11g1058 642 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 123 623 - -
Vra11g1058 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 418 IPR013083 -
Vra11g1058 642 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 123 623 IPR031127 GO:0004842|GO:0016567
Vra11g1058 642 SUPERFAMILY RING/U-box 330 414 - -
Vra11g1058 642 ProSiteProfiles Zinc finger RING-type profile. 335 383 IPR001841 -
Vra11g1058 642 SMART ibrneu5 490 555 IPR002867 -
Vra11g1058 642 SMART ibrneu5 403 461 IPR002867 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1058 334 565 C3H Transcription Factor Family AT2G31770 25.417 1.94e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1058 K11971 - gmx:100500662 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1058 11 9765397 9771352 Vra11g1058 11 9765397 9771352 ECH