Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1056 ATGGATAGCGGTGCGTCTGCTCCGGCGGCGCCGATTCCGAACGCCAACGCGCCGCCGCCATTTCTGAGCAAGACTTACGACATGGTCGAAGACCCTTCCACCGACGCGATCGTGTCATGGAGCGCAACCAACAACAGCTTCATCGTGTGGGACCCACCCGAATTTGCCAGGGACCTTTTGCCCAAATACTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTATGGTTTCAGAAAGGTCGATCCAGACCGTTGGGAATTTGCAAATGAGGGTTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAATATAACACGAAGAAAACCTGCCCATGGTCAAAATCATCAACAAGCTCAGCAACCCCATGGACAGAGTTCATCAGTAGGGGCATGTGTTGAAGTCGGAAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAGACCACTGATAACCAGTTGCAAACAATGGTTCAGCGTCTTCAGGGAATGGAGCAACGACAGCAGCAAATGATGTCATTCCTTGCGAAAGCTGTCCAGAGCCCTGGATTCTTTGCTCAGTTTGTACAACAACAAAATGAGAGCAATAGGCGCATAAGTGAAGTCAACAAAAAGCGTAGGCTCAAGCAGGAAGGTATTGCAGAAACAGTGAGTGCTGCTACTCCAGATGGGCAAATCGTTAAATATCAACCTCTGGCGAATGAAGCTGCAAAAGCCATGCTTAAGCAGATCATGAAATGGGATACTTCTCGTGTAGAATCTTTTAATAAAAACCCCGAGGAGTACATCATTGGTGATGCTTCATCATCTTCCAGTGGAATGGACAGTAGTGGCTCTTCAGGATGGACTTCCGGAGTCACTCTTAAGGAGGTATCTCCAGCTTCGGTGCAGTCTTCACACGTTCCAGCTGCTACTGGGACCCAAGGGCATGTTCACCCGACTGTTAAACCTGAAATTCCGTCTGTACCACAAGCAGTAGCTTCTGAAAATGTTACAAAGGATGGAGGACATGGTGAGCCTTCTATCCCCGTTTCTCAAGCAGATGTGTTGATCCCTGATCTTCCTCCAATATCAGAGATGGTGGTAGGAAATATGCTTGATATTCCCGAAGAAAATTATATGGCAACTGAATCGGATGAGGGATATATGGATCCTTCACTGGGCGATGCCGGGTCATTTCCCATTGATTTTGAGGTTATTTCACCTGATAACATTGATGATTTCTTAGGAAATCCTTCTATTTGGGATGAAATTTTGCAGACTCCAGTTCCAGAGGATATCGACACCAATATTGCCGATGTACCCAACGGGAACGAGGTCCAGCCAACGGAAAATGGATGGAGCAAAACTCAACGTATGGATCACCTTACAGAGCAGATGGGTCTTCTTTCTTCTGATACAAAACGAGTTTGA 1473 0.465 MDSGASAPAAPIPNANAPPPFLSKTYDMVEDPSTDAIVSWSATNNSFIVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRNITRRKPAHGQNHQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNRRISEVNKKRRLKQEGIAETVSAATPDGQIVKYQPLANEAAKAMLKQIMKWDTSRVESFNKNPEEYIIGDASSSSSGMDSSGSSGWTSGVTLKEVSPASVQSSHVPAATGTQGHVHPTVKPEIPSVPQAVASENVTKDGGHGEPSIPVSQADVLIPDLPPISEMVVGNMLDIPEENYMATESDEGYMDPSLGDAGSFPIDFEVISPDNIDDFLGNPSIWDEILQTPVPEDIDTNIADVPNGNEVQPTENGWSKTQRMDHLTEQMGLLSSDTKRV* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1056 490 Coils Coil 139 166 - -
Vra11g1056 490 Gene3D - 14 111 IPR036388 -
Vra11g1056 490 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 476 IPR027725 -
Vra11g1056 490 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g1056 490 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g1056 490 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g1056 490 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g1056 490 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g1056 490 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 9 476 - -
Vra11g1056 490 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g1056 490 SUPERFAMILY "Winged helix" DNA-binding domain 16 110 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1056 Vra-Chr11 9734848 9738892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1056 8 487 HSF AT1G32330 55.159 1.68e-171 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra11g1056 HSF_DNA-bind 1.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1056 K09419 - gmx:100815121 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1056 11 9734848 9738892 Vra11g1056 11 9734848 9738892 ECH