Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1055 ATGACATTGGTTATCAGAGAGAGGAGACACAAGCAAGCTCTCAGGCTTTCATTACCAAAATCTCCTTCAATCCCATCATCAAATTCAGATTCCCCTCACCAAATTCATGTACACTCTCCTCCAGGCATTATTAAGGATCTTTCGCATCTTGAAAAGCGAGAAGTTCTTGGTCATGGTAATGGTGGCACAGTTTACAAGGTTTATCACAAAAAAACCAGCTCTTTTTATGCCTTGAAAGTGCTACGTTTGAATGAGAATGGCTTTGGCATTCGCCAAACCGCTAAACTGGAGGCTGACATTCTAAAACGAGTGGATTCACCGTATATAGTAAAGTGTCATGCAGTTTTTGACAGTTGTAACAGCAATAATGATGGAGACAACGGAGGTGACATTAGCTTTGTTATGGAATACATGGAAGGAGGGTCGTTGAATGATGTATTGAGAATACATCATAGACTGTCAGAAAAGGTTATCTCGGTGTTGGGTAGGCGTGTTTTGGAAGGACTTAGGTATTTACATGGCATGAACATTGTGCACAGAGATATTAAACCATCAAACTTACTTGTGAACGATAAAGGGGAGGTAAAGATTGCAGATTTTGGAGTGAGTCATGTGGTGGAAGGTAGGTTTGAAGGAAATGAGTACGATGCAGGCACTTGTGCTTATATGAGTCCAGAAAGGATTGATCCAGAAAGATGGGGTGGTGAAAATGTAGATGAGTTTGCAGGAGATGTGTGGTCAATGGGAGTAGTAATGTTGGAATGTCTTTTGGGTTATTTTCCATTGATTGGAGCAGGGCAGAGACCAGATTGGGCAACTTTGATGTGTGCAATTTGCTTTGCTGAGAAGCTGGAGATGCCAGAAAAAGCATCACCAGAGTTTCAAAATTTTGTGAGGAGGTGTCTTGAGAAGAATTGGAGGAAGAGAGCAACAGTGTTAGAACTTCTGCATCACCCTTTTGTCAGTTAA 969 0.4138 MTLVIRERRHKQALRLSLPKSPSIPSSNSDSPHQIHVHSPPGIIKDLSHLEKREVLGHGNGGTVYKVYHKKTSSFYALKVLRLNENGFGIRQTAKLEADILKRVDSPYIVKCHAVFDSCNSNNDGDNGGDISFVMEYMEGGSLNDVLRIHHRLSEKVISVLGRRVLEGLRYLHGMNIVHRDIKPSNLLVNDKGEVKIADFGVSHVVEGRFEGNEYDAGTCAYMSPERIDPERWGGENVDEFAGDVWSMGVVMLECLLGYFPLIGAGQRPDWATLMCAICFAEKLEMPEKASPEFQNFVRRCLEKNWRKRATVLELLHHPFVS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1055 322 Gene3D Transferase(Phosphotransferase) domain 1 44 322 - -
Vra11g1055 322 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Vra11g1055 322 PRINTS Tyrosine kinase catalytic domain signature 171 189 IPR001245 GO:0004672|GO:0006468
Vra11g1055 322 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Vra11g1055 322 MobiDBLite consensus disorder prediction 15 38 - -
Vra11g1055 322 ProSiteProfiles Protein kinase domain profile. 50 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1055 322 SUPERFAMILY Protein kinase-like (PK-like) 25 321 IPR011009 -
Vra11g1055 322 Pfam Protein kinase domain 51 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1055 322 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 5 321 IPR045269 GO:0004674|GO:0006914
Vra11g1055 322 SMART serkin_6 50 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1055 322 CDD PKc_MAPKK_plant_like 48 321 - -
Vra11g1055 322 MobiDBLite consensus disorder prediction 19 35 - -
Vra11g1055 322 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Vra11g1055 322 ProSitePatterns Protein kinases ATP-binding region signature. 56 79 IPR017441 GO:0005524
Vra11g1055 322 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-LIKE 5 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1055 Vra-Chr11 9717592 9718631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1055 1 321 MAP Kinase Kinase Gene Family AT1G32320 54.658 8.68e-111 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vra11g1055 Pkinase 8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1055 K20604 - vra:106777505 629.787