Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1044 ATGGAACTTTTCCCAGCACAACCAGACTTGTCCTTACAAATCAGCCCTCCAAACGCCAAACCAACATCAACTTGGAGGAGGAGCACAGAAGAAGACATGGATTTGGGGTTTTGGAAGAGAGCCTTGGACTCAAGAAACTCCATATCATCAATGGCCAAACAAGACTCTTGCGTCACCCTCTCCCTCTCCAATCCAAAAGCCTCCTCGGATAACTCCAACTCCTCTAACCTCATTCACCACTTCCAAAACGGTGCCAATAATGCCACCACCAACCCCTTCCAACCCTTTCAGCAGAACCATTACTTCCACCAGCCACTGTTCCAGCCTCCCCACCAAAGCCTCAGCCAAGACCTCGGCTTTCTCAGACCCATTAGAGGAATCCCAGTGTACCAAAACCCTCCTCCTTTACCATTCACTCAGCATCACCACCACCACCATCTCCCTCTAGAGCCTTCAACCACCACCCCTTCTTCTATTATTTCCAGCACCAACACTTCTTCTACCCCTTTCCACTCTCAGGCCCTTATGAGATCAAGGTTCTTGTCACGCTTCCCTGCTAAGCGTAGCATGAGGGCTCCCAGGATGCGTTGGACTTCTACCCTCCATGCTCGCTTTGTCCATGCCGTTGAACTCTTAGGTGGCCACGAAAGGGCTACACCCAAATCAGTTCTTGAGCTAATGGATGTGAAGGATCTCACTTTAGCACATGTCAAGTCTCATTTACAGATGTACCGGACGGTGAAAACTACAGATAGAGCTGCGGCTTCATCAGGGCAATCGGATGTGTATGATAATGGGTCGTCGGGAGATACTTCTGATGACTTAATGTTTGATATAAAATCTTCTCGAAGGTCTGATGTATCCATTAAACAGGGAAGATCAAGTGTTAATCAAGATAAGGATTATCATGGTCTTTGGGGCAACTCTTCCAGGGAAGCTTGGTTGCATGGGAAGACAAGGACTGATTCTGTTGGAAACGTGCCATCTCTTGAGAAGGAAATGGATCCGAAGTGTGTGAGTTATGAGAGAATATCAGATGGAAGCTCATCTTCAAATGTGTCAGGATCAAGCCCGAAGAAGGCTAATTTGGATTTGGAATTCAGCTTGGGGCAGCCACTTTAA 1122 0.475 MELFPAQPDLSLQISPPNAKPTSTWRRSTEEDMDLGFWKRALDSRNSISSMAKQDSCVTLSLSNPKASSDNSNSSNLIHHFQNGANNATTNPFQPFQQNHYFHQPLFQPPHQSLSQDLGFLRPIRGIPVYQNPPPLPFTQHHHHHHLPLEPSTTTPSSIISSTNTSSTPFHSQALMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYDNGSSGDTSDDLMFDIKSSRRSDVSIKQGRSSVNQDKDYHGLWGNSSREAWLHGKTRTDSVGNVPSLEKEMDPKCVSYERISDGSSSSNVSGSSPKKANLDLEFSLGQPL* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1044 373 MobiDBLite consensus disorder prediction 136 169 - -
Vra11g1044 373 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 193 246 IPR006447 GO:0003677
Vra11g1044 373 Gene3D - 192 249 - -
Vra11g1044 373 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 372 - -
Vra11g1044 373 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 372 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vra11g1044 373 MobiDBLite consensus disorder prediction 251 275 - -
Vra11g1044 373 MobiDBLite consensus disorder prediction 150 169 - -
Vra11g1044 373 MobiDBLite consensus disorder prediction 1 28 - -
Vra11g1044 373 SUPERFAMILY Homeodomain-like 190 246 IPR009057 -
Vra11g1044 373 MobiDBLite consensus disorder prediction 251 276 - -
Vra11g1044 373 MobiDBLite consensus disorder prediction 343 361 - -
Vra11g1044 373 MobiDBLite consensus disorder prediction 317 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1044 Vra-Chr11 9612064 9617329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1044 1 372 G2-like Transcription Factor Family AT4G17695 38.363 3.90e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra11g1044 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1044 - - gmx:100798081 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1044 11 9612064 9617329 Vra11g1044 11 9612064 9617329 ECH
Vra11g1044 11 9612064 9617329 Vra7g0345 7 5395082 5399121 PCT