LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra11g1043	ATGGTGGAAAGAAGAGTGACTTTATCTAAGGAAGTTAGGAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCACAATCTGTCACTGCTGCCCAAACAAATATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTTTAAGAGATTCAGCATCATGTGGCATGAGATTGCATGGCAATGCTGATGTCTTTTCCAAACGAAAGGTGGATAAGTTTGACACAAATGACCTAGACTGGACTGAAACAATTCCAGAGTGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGATCCTTTGGTTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCTCCTTTGAGCGCTTCAGTACCTGCTGGGGTTGTATTAATGAAGGAGAAAGCAGGTTTCAAGTTTACAACTAGAGTGCAGCCTCTCCGCCTTGCTGAATGGGATTCTGAAGACAAAGTCACGTTTTTTATGAGTGGAAGAAATTATACATTTCGTGATTTTGAGAAAATGGCAAACAAGGTATTTGCTAGAAGATATTGCAGTGCTGGATGCCTTCCTGCCACATACTTGGAAAAAGAGTTTTGGAATGAAATTGGTTGTGGGAAGATGGAAAGTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCATTGACCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTATCAAGGTTGCCCAAATCAAGTTTACGGCTCTTGGAAACATTAATTCCGGGAGTAACCGAGCCCATGTTGTACATTGGAATGCTGTTCAGCATGTTTGCTTGGCATGTGGAAGATCATTATTTGTACAGCATTAATTATCATCATTGTGGCGCATCCAAAACATGGTACGGTATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTACACCAATGATATTTTGTCAAGTGATGGGGAAGATGGTGCATTTGATGTTCTTCTGGGGAAAACAACTCTATTTCCACCAAATATTTTGTTAGAGCATGAAGTTCCTGTCTACAAGGCTGTTCAAAAGCCTGGGGAGTTTATAATAACTTTCCCCAGAGCATATCATGCTGGCTTCAGTCATGGTTTTAATTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCGTTAGGGGCTATTGCTAGCAGAAGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTCCGTACATGCTTGGAACTTGAAGATTCAGATTTTCCCTCTTCAGACTCTCTTTCTCATAATAGCATTAAGATTTCATTTGTTAATTTGATGCGATTCCAGCATTGCGCGCGATGGTTTCTAACTAAATCAAGGGCTTGTATAAGCGTCTCTTCTCATTCCCATGGCACAATTCTCTGTAGCCTTTGCAAACGTGACTGTTACGTAGCTTATGTTGATTGCAACTGTCATATGCATCCTGTATGCCTACGTCACGATGTTGATTCTCTTGATTTCACCTGTGGGAGCAAACACACACTTTATTTGAGGGAGGATATTATGGATATGGAAGCCGCAGCTAAGATGTTTGAGCAGGAAGATGGGATATCACATGAGATAAGGAAGCAAACCAATAGTGGTCAAAACATGTATGCATATCCTTTGTCAAATATGTTTCAGAGAGCCGAGGCAAATGGATACATTCCTTATTGTGAGCTAAAACTTGATTCCGTTGTTGAATTTTATACAACTCCAGAGCACCCAACAAATAATCAAGAATACAGTACACAGAATCAATCTGTCTTTGTACATTGCTCTGAAAATCAAATACCTTTGGTGTCTGACGTTTCCTTTTCTTCAGCCACATCCACTCTTTCTGAATCCCTTGAGAGCTTCTCTACTCCCAAAAATGCTGAAGGGCATACAAATATCAATTTAGGAGGTATTGTTGATTTTGAGGATTTTGGTGAAAGGATACCCAACAGTGCATGTGAATCTTCGTTATCCCCTGCTGTGTGCAATGAAAGCTGGATTAAACCACAGACTGTTGTTCAGAGAGTTGATACAAAGCCCATCGCGGACGAGAGTGATTCTGATTCAGAGATGTTTAGGGTAAAGCGCCCTTCTTCTCTGAAAGCAGAGAGGAGAAATATGAATGATGTCACGTCTTCAAAGCAGACTGAGCAGCAGGGACTAAAACGTCTGAAGAAAGTCCTTCCTGAAGGAAGAAGTGATCAACCAATGGATTTCAGAACTCAGGAGTTAAGTTACAAACACAGTCACCCTGTTAGCCATAAAAGTCGTGTTGAAGTCTCCTCCAGGGACAGATTTGCAAGGGGTAATGGCATTCCCATTTCGATAAGATATAAGAAGTTAGGGAACGAGGAAATAAGTATGCAACGAGATCACCACCAACACCGGAGAGATAGGTTCTTGCAGCAACAGACATTTAGGGAACCGCCTTCCATTGAGATTGAGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCGTTTTTAGGCTTAGAGAGCAGATTGAATTGA	2571	0.4123	MVERRVTLSKEVRNGLEFLKRKRLQRAQSVTAAQTNIANMMNRSGGDALRDSASCGMRLHGNADVFSKRKVDKFDTNDLDWTETIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDSEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWNEIGCGKMESVEYACDVDGSAFSSSPIDQLGNSKWNLKKLSRLPKSSLRLLETLIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLRTCLELEDSDFPSSDSLSHNSIKISFVNLMRFQHCARWFLTKSRACISVSSHSHGTILCSLCKRDCYVAYVDCNCHMHPVCLRHDVDSLDFTCGSKHTLYLREDIMDMEAAAKMFEQEDGISHEIRKQTNSGQNMYAYPLSNMFQRAEANGYIPYCELKLDSVVEFYTTPEHPTNNQEYSTQNQSVFVHCSENQIPLVSDVSFSSATSTLSESLESFSTPKNAEGHTNINLGGIVDFEDFGERIPNSACESSLSPAVCNESWIKPQTVVQRVDTKPIADESDSDSEMFRVKRPSSLKAERRNMNDVTSSKQTEQQGLKRLKKVLPEGRSDQPMDFRTQELSYKHSHPVSHKSRVEVSSRDRFARGNGIPISIRYKKLGNEEISMQRDHHQHRRDRFLQQQTFREPPSIEIEPKRLKVRGPSFLGLESRLN*	857

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra11g1043	856	ProSiteProfiles	JmjN domain profile.	88	129	IPR003349	-
	Vra11g1043	856	SUPERFAMILY	Clavaminate synthase-like	166	421	-	-
	Vra11g1043	856	PANTHER	LYSINE-SPECIFIC DEMETHYLASE	53	852	-	-
	Vra11g1043	856	PANTHER	TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN	53	852	-	-
	Vra11g1043	856	MobiDBLite	consensus disorder prediction	741	758	-	-
	Vra11g1043	856	ProSiteProfiles	JmjC domain profile.	235	405	IPR003347	-
	Vra11g1043	856	Pfam	jmjN domain	89	121	IPR003349	-
	Vra11g1043	856	Pfam	JmjC domain, hydroxylase	265	388	IPR003347	-
	Vra11g1043	856	MobiDBLite	consensus disorder prediction	725	758	-	-
	Vra11g1043	856	Gene3D	Cupin	88	445	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra11g1043	Vra-Chr11	9525518	9531952	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra11g1043	85	423	JUMONJI Transcription Factor Family	AT1G30810	35.910	6.71e-62	223

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Vra11g1043		JmjC	1.9e-39	CL0029

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra11g1043	-		-	gmx:100798611	1486.47

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra11g1043	11	9525518	9531952	Vra11g1043	11	9525518	9531952	ECH

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