Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1043 ATGGTGGAAAGAAGAGTGACTTTATCTAAGGAAGTTAGGAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCACAATCTGTCACTGCTGCCCAAACAAATATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTTTAAGAGATTCAGCATCATGTGGCATGAGATTGCATGGCAATGCTGATGTCTTTTCCAAACGAAAGGTGGATAAGTTTGACACAAATGACCTAGACTGGACTGAAACAATTCCAGAGTGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGATCCTTTGGTTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCTCCTTTGAGCGCTTCAGTACCTGCTGGGGTTGTATTAATGAAGGAGAAAGCAGGTTTCAAGTTTACAACTAGAGTGCAGCCTCTCCGCCTTGCTGAATGGGATTCTGAAGACAAAGTCACGTTTTTTATGAGTGGAAGAAATTATACATTTCGTGATTTTGAGAAAATGGCAAACAAGGTATTTGCTAGAAGATATTGCAGTGCTGGATGCCTTCCTGCCACATACTTGGAAAAAGAGTTTTGGAATGAAATTGGTTGTGGGAAGATGGAAAGTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCATTGACCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTATCAAGGTTGCCCAAATCAAGTTTACGGCTCTTGGAAACATTAATTCCGGGAGTAACCGAGCCCATGTTGTACATTGGAATGCTGTTCAGCATGTTTGCTTGGCATGTGGAAGATCATTATTTGTACAGCATTAATTATCATCATTGTGGCGCATCCAAAACATGGTACGGTATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTACACCAATGATATTTTGTCAAGTGATGGGGAAGATGGTGCATTTGATGTTCTTCTGGGGAAAACAACTCTATTTCCACCAAATATTTTGTTAGAGCATGAAGTTCCTGTCTACAAGGCTGTTCAAAAGCCTGGGGAGTTTATAATAACTTTCCCCAGAGCATATCATGCTGGCTTCAGTCATGGTTTTAATTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCGTTAGGGGCTATTGCTAGCAGAAGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTCCGTACATGCTTGGAACTTGAAGATTCAGATTTTCCCTCTTCAGACTCTCTTTCTCATAATAGCATTAAGATTTCATTTGTTAATTTGATGCGATTCCAGCATTGCGCGCGATGGTTTCTAACTAAATCAAGGGCTTGTATAAGCGTCTCTTCTCATTCCCATGGCACAATTCTCTGTAGCCTTTGCAAACGTGACTGTTACGTAGCTTATGTTGATTGCAACTGTCATATGCATCCTGTATGCCTACGTCACGATGTTGATTCTCTTGATTTCACCTGTGGGAGCAAACACACACTTTATTTGAGGGAGGATATTATGGATATGGAAGCCGCAGCTAAGATGTTTGAGCAGGAAGATGGGATATCACATGAGATAAGGAAGCAAACCAATAGTGGTCAAAACATGTATGCATATCCTTTGTCAAATATGTTTCAGAGAGCCGAGGCAAATGGATACATTCCTTATTGTGAGCTAAAACTTGATTCCGTTGTTGAATTTTATACAACTCCAGAGCACCCAACAAATAATCAAGAATACAGTACACAGAATCAATCTGTCTTTGTACATTGCTCTGAAAATCAAATACCTTTGGTGTCTGACGTTTCCTTTTCTTCAGCCACATCCACTCTTTCTGAATCCCTTGAGAGCTTCTCTACTCCCAAAAATGCTGAAGGGCATACAAATATCAATTTAGGAGGTATTGTTGATTTTGAGGATTTTGGTGAAAGGATACCCAACAGTGCATGTGAATCTTCGTTATCCCCTGCTGTGTGCAATGAAAGCTGGATTAAACCACAGACTGTTGTTCAGAGAGTTGATACAAAGCCCATCGCGGACGAGAGTGATTCTGATTCAGAGATGTTTAGGGTAAAGCGCCCTTCTTCTCTGAAAGCAGAGAGGAGAAATATGAATGATGTCACGTCTTCAAAGCAGACTGAGCAGCAGGGACTAAAACGTCTGAAGAAAGTCCTTCCTGAAGGAAGAAGTGATCAACCAATGGATTTCAGAACTCAGGAGTTAAGTTACAAACACAGTCACCCTGTTAGCCATAAAAGTCGTGTTGAAGTCTCCTCCAGGGACAGATTTGCAAGGGGTAATGGCATTCCCATTTCGATAAGATATAAGAAGTTAGGGAACGAGGAAATAAGTATGCAACGAGATCACCACCAACACCGGAGAGATAGGTTCTTGCAGCAACAGACATTTAGGGAACCGCCTTCCATTGAGATTGAGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCGTTTTTAGGCTTAGAGAGCAGATTGAATTGA 2571 0.4123 MVERRVTLSKEVRNGLEFLKRKRLQRAQSVTAAQTNIANMMNRSGGDALRDSASCGMRLHGNADVFSKRKVDKFDTNDLDWTETIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDSEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWNEIGCGKMESVEYACDVDGSAFSSSPIDQLGNSKWNLKKLSRLPKSSLRLLETLIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLRTCLELEDSDFPSSDSLSHNSIKISFVNLMRFQHCARWFLTKSRACISVSSHSHGTILCSLCKRDCYVAYVDCNCHMHPVCLRHDVDSLDFTCGSKHTLYLREDIMDMEAAAKMFEQEDGISHEIRKQTNSGQNMYAYPLSNMFQRAEANGYIPYCELKLDSVVEFYTTPEHPTNNQEYSTQNQSVFVHCSENQIPLVSDVSFSSATSTLSESLESFSTPKNAEGHTNINLGGIVDFEDFGERIPNSACESSLSPAVCNESWIKPQTVVQRVDTKPIADESDSDSEMFRVKRPSSLKAERRNMNDVTSSKQTEQQGLKRLKKVLPEGRSDQPMDFRTQELSYKHSHPVSHKSRVEVSSRDRFARGNGIPISIRYKKLGNEEISMQRDHHQHRRDRFLQQQTFREPPSIEIEPKRLKVRGPSFLGLESRLN* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1043 856 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Vra11g1043 856 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Vra11g1043 856 PANTHER LYSINE-SPECIFIC DEMETHYLASE 53 852 - -
Vra11g1043 856 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 53 852 - -
Vra11g1043 856 MobiDBLite consensus disorder prediction 741 758 - -
Vra11g1043 856 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Vra11g1043 856 Pfam jmjN domain 89 121 IPR003349 -
Vra11g1043 856 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Vra11g1043 856 MobiDBLite consensus disorder prediction 725 758 - -
Vra11g1043 856 Gene3D Cupin 88 445 - -
Vra11g1043 856 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Vra11g1043 856 SMART JmjN_1 87 128 IPR003349 -
Vra11g1043 856 MobiDBLite consensus disorder prediction 813 834 - -
Vra11g1043 856 SMART cupin_9 232 405 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1043 Vra-Chr11 9525518 9531952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1043 85 423 JUMONJI Transcription Factor Family AT1G30810 35.910 6.71e-62 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra11g1043 JmjC 1.9e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1043 - - gmx:100798611 1486.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1043 11 9525518 9531952 Vra11g1043 11 9525518 9531952 ECH