Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1042 ATGTATGGGGATTGCCAGGTTATGTCAAGTATGGGAGGGAACGTAGTAGTGAACTCCGATACTCTCTTCTCCTCCTCGATCCAGAACTCTAACTTTAACTTCATCCCCACCATGCCTTTTCAACCTTTTCCTTCCATGCAGAAGGAAGAAGAGATGATGCTGCGAGGGAAGGAAGAGATGGAGAGTGGGTCAGGAAGCGAACAGGTCGAAGATAAGTCAGGGAATGAACAAGAGAGTGAACAACCCACAAAGAAAAAACGATATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCTCACCCAGATGATAAGCAGAGGCTGAAACTGAGCCATGAATTGGGCCTGAAACCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGTCGAACCCAGATGAAGGCACAACAAGATCGGGCAGATAATATCATACTTAGAGCCGAGAATGAGACTCTAAAGAGTGAGAACTATCGGTTACAAGCCGCACTGCGTAACGTTATGTGTCCCAATTGTGGTGGCCAATGTATAATGGGTGCTGATCTGGGTTTGGATGAACACCAACTTCGCATGGAAAATGCCCGGTTGAGAGAAGAGTTAGAACGCGTGTGTTGCCTCACTTCAAGGTACACTGGGCGTTCATTACAAACAATGGCAGCAGGTCCAACTCTCATGGCCCCTTCATTGGATTTGGATATGAACATATATCCAAGGCACTATTCGGATCCTGTTGCTCCTTGCACAGAAATGATTCCTGTGCCAATGTTGCCTCCTGAAGCTTCACCATTTGCTGAGGGTGGAGGAATCTTGATGGAAGAAGAAAAGTCTCTGGCCTTAGAGCTCGCGGCTTCTTCCATGGCAGAACTTGTGAAGATGTGTCAGACAAACGAGCCACTTTGGATCCGAAGCAGTGATGGCGAAAGGGAAGTGTTGAATTTTGAAGAGCACGCTAGGATATTTCCTTGCCCTCAGAATCTCAAGCACCGAAGTGAACTGAGAACTGAAGCTAGCCGTGACACTTCTGTGGTTATAATGAACAGTGTCACTCTTGTTGATGCATTCCTTGATGGTCAAAAATGGATGGAATTGTTTCCTTCAATCGTGTCTCGAGCAAAAACTGTCCAAATCATATCTTCTGTTGCTTCTGGTCATGCAAGCGGGACTCTTCAGCTGATGTACGCAGAATTTCAAGTTCTTTCTCCTTTGGTGTCCACTCGCGAGACTCATTTCCTTCGTTATTGTCAACAAAATGCTGAGGAGGGGACCTGGGCCATTGTCGATTTTCCTGTTGACAACTTTCACCAAAATTTTCACCCTTCTTATCCCAAATACTGCAGGAGATCCTCCGGTTGCGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTAGAAGAGAAACCTGTCCATCAGATATTCAGCAACTATGTGTACAGTGGAATGGCATTCGGAGCACAGCGTTGGTTAGGAGTTTTGCAGAGACAATGCGAGAGGGTCGCGAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTGATACCTTCTCCAGAAGCGCGAAAGAACTTGATGAAACTAGCCCAAAGAATGATAAAAACGTTTGGCCTTAACATGAGTACCTCTGGTGGTCAATCGTGGACAGCTATATCAGATTCCCCTGAAGACACGGTTAGAATCACAACTAGGAAAGTCACGGAGCCTGGCCAACCTAATGGTGTGATTCTAAGTGCTGTTTCAACCACTTGGTTGCCCTATTCTCATACCAAGGTCTTTGATCTCCTCAGGGACGAACGTCACAGATCTCAGATGGATGCTCTTTCTAACGGGAATTCATTGAATGAGGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCACTTCTTCGCATAAATGTAGCAAGCAACTCATCCCAGAACGTAGAGCTAATGCTGCAAGAGAGTTGCACCGACCAGTCTGGAAGCTTGGTGGTGTACACGACCATTGATGTGGATTCCATCCAGCTAGCCATGAGTGGCGAGGACCCTTCTTGCATTGCCCTTCTCCCCCAAGGCTTCATGATAGTGCCAATGCTATCATCACCCAACGTTGACACACCCATCAATGGTAACTCCTCAGAGTCTCCATCTCTGAACTCGGGTTGCCTCCTAACCATGGGGCTGCAAGTTCTCGCCAGCACAATCCCTTCTGCAAAGCTGAACCTCTCAAGTGTGACGGCCATCAACAACCACCTCTGCAACACCTTGCACCAAATCGAAGCTGCTCTTTCTAGTAGCAGTGAGAATGGGACGAATTTCCTTTGCACTGAACCCACAGTGAGTGGAGCTCCAAAGCAGTGA 2379 0.4716 MYGDCQVMSSMGGNVVVNSDTLFSSSIQNSNFNFIPTMPFQPFPSMQKEEEMMLRGKEEMESGSGSEQVEDKSGNEQESEQPTKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRADNIILRAENETLKSENYRLQAALRNVMCPNCGGQCIMGADLGLDEHQLRMENARLREELERVCCLTSRYTGRSLQTMAAGPTLMAPSLDLDMNIYPRHYSDPVAPCTEMIPVPMLPPEASPFAEGGGILMEEEKSLALELAASSMAELVKMCQTNEPLWIRSSDGEREVLNFEEHARIFPCPQNLKHRSELRTEASRDTSVVIMNSVTLVDAFLDGQKWMELFPSIVSRAKTVQIISSVASGHASGTLQLMYAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDNFHQNFHPSYPKYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIKTFGLNMSTSGGQSWTAISDSPEDTVRITTRKVTEPGQPNGVILSAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCIALLPQGFMIVPMLSSPNVDTPINGNSSESPSLNSGCLLTMGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEAALSSSSENGTNFLCTEPTVSGAPKQ* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1042 792 Gene3D - 330 499 IPR023393 -
Vra11g1042 792 PANTHER - 61 777 - -
Vra11g1042 792 SMART HOX_1 83 146 IPR001356 GO:0003677
Vra11g1042 792 CDD START_ArGLABRA2_like 280 509 - -
Vra11g1042 792 MobiDBLite consensus disorder prediction 50 85 - -
Vra11g1042 792 Gene3D - 70 152 - -
Vra11g1042 792 CDD homeodomain 85 143 IPR001356 GO:0003677
Vra11g1042 792 SMART START_1 285 510 IPR002913 GO:0008289
Vra11g1042 792 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Vra11g1042 792 Pfam START domain 286 510 IPR002913 GO:0008289
Vra11g1042 792 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 61 777 IPR042160 -
Vra11g1042 792 SUPERFAMILY Homeodomain-like 76 143 IPR009057 -
Vra11g1042 792 SUPERFAMILY Bet v1-like 277 512 - -
Vra11g1042 792 ProSiteProfiles START domain profile. 276 513 IPR002913 GO:0008289
Vra11g1042 792 Pfam Homeodomain 85 140 IPR001356 GO:0003677
Vra11g1042 792 SUPERFAMILY Bet v1-like 528 766 - -
Vra11g1042 792 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Vra11g1042 792 MobiDBLite consensus disorder prediction 49 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1042 Vra-Chr11 9487509 9493516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1042 8 772 Homeobox Transcription Factor Family AT5G46880 57.539 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra11g1042 START 2.4e-38 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1042 - - gmx:100812829 1415.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1042 11 9487509 9493516 Vra11g1042 11 9487509 9493516 ECH
Vra11g1042 11 9487509 9493516 Vra8g2264 8 40902975 40909124 ECH