Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1031 ATGGCACCACCAATAACCGACTCGGAACCAGAATCCGAAGCGCTGCGCCTCAAGGCCATGGCGGAGTCCAAGTTCAAAGCCTCCAACAACGCCAAATCTGCTCTCAAATACGCGAAGCGTGCGCAGCGTCTGTGCCCGCACCTCGACGGCGTGTCGGAGGCCGTCACTTCGCTCACTGTCCTCGCCGCGTCGGACTGGTATAGTGCGCTCGGTACTGAGCCCTTTGCAAACAGCAGCGTCATTCGGAGACAGTACAAGAAACTCGCACTGCTCCTCCATCCCGACAAGAACCCCAACGTGGCGTCCGAGGAGGCCTTCAAGCTCGTCGGCGAGGCCTTCCACTTCCTTTCCGACCGGAGTCGCCGCCGAGAGTACGATGCCGAGCTCCGACAGAAGATCAAGGCGGAGAGCGAGACGTTCTGGACCGCCTGCTCCACTTGCAGGCTCCTTCACCAGTTCCAGAGAAAGTATATGGGTCAAGAATTGGTGTGTCCGAGTTGTGAGAAGAGTTTTAAGGCTGTGGAAACGGTTCAGAGTGATGGGGATGGTGATGGGGAAGGTAGGGTTAGGAGTATGAGGTTGAAGTTGAAAGAGATAAATAAGAAGGAGAAAATTGGTGTGAAAGGAAAAGTGGATAGTGAAGTGGGGGATGAGAAGGAAGGGAAATTGAGGAAGAGAATGCGTTCAGTCGGGGAGGTGTTGGAGAGGTCCAAACCTAGTAAAAGGGTTAAAAATGGGGAGGAAATGATGACATTAGCTGAATTTCAGACTGAGGTGAGGAGAAAGTTGCAGGAAAAAAAGTTGAAGGAAAAAGAAAAGGAAAAGGAGGATGATAGAATTGAGAAGAGGAGCAACCGGGGGGAGAGGCGGCGGACATTGAAAAACTCTGAAGGTTTAGAGGTTGGAGAGGGGAGGGCTTTGAAGAAGAGTGTGAGGCTTGGGATTGAGGAGAGTCTTGTGGGTTTATCGAAGAGAAAGGGGTTGAGATCTGCGAGGCATAGGGATTCTGATAAAGGGGAGTCGGAAAACATGGCGGTGGTGGATTCAGATTTTTATGATTTTGACAAAGATAGAGTGGAGAAGAGTTTTAAGAAAGGTCAAGTGTGGGCAGTGTATGACGATGATGATGGAATGCCAAGGAATTATGCCCTGATTGATGAAACTCTTTCACTGAATCCTTTTGAAGTGAGATTAAGTTGGTTAGATGTACAGATCAGTGGGGATGGGAGGATAGTTAGTAGGGAGAGAATGGGGTTTCATACACCTTGTGGGAGATTTAAGGTTGCCAGGAAGACTTCGGTGAATTCGGTAAATATATTTTCCCATGTTGTGGATTGTGACCGGGCAGCACGTGAACTTTACAAAATTTACCCCAAGAAAGGCTCGGTATGGGCGCTGCATGGCGAGGGAAGTATTGATGCAGAGGACCGCAAGAGATGCTATGACATTGTTGTATGTCTGACAAGTTACAATGAGTCAAATGGTCTGAGCATGGCGTATCTTGAGAAGGTCGATGGTTACAAGACAGTATTTAGGCGGCAAAAGAAGGGGAGTGGTGCTATTATATTTCTTGGGAAGGATGACATGTGCTTAGTTTCTCATCAAATTCCAGCACGGAAGCTTATTTGTGATGAAACTCCTGAACTGTTGAAAGACTGTTGGGAACTTGATCCCGCATCACTTCCTTCAGATTTACTTACTATTGGTGGCATTGATAATTGA 1722 0.4832 MAPPITDSEPESEALRLKAMAESKFKASNNAKSALKYAKRAQRLCPHLDGVSEAVTSLTVLAASDWYSALGTEPFANSSVIRRQYKKLALLLHPDKNPNVASEEAFKLVGEAFHFLSDRSRRREYDAELRQKIKAESETFWTACSTCRLLHQFQRKYMGQELVCPSCEKSFKAVETVQSDGDGDGEGRVRSMRLKLKEINKKEKIGVKGKVDSEVGDEKEGKLRKRMRSVGEVLERSKPSKRVKNGEEMMTLAEFQTEVRRKLQEKKLKEKEKEKEDDRIEKRSNRGERRRTLKNSEGLEVGEGRALKKSVRLGIEESLVGLSKRKGLRSARHRDSDKGESENMAVVDSDFYDFDKDRVEKSFKKGQVWAVYDDDDGMPRNYALIDETLSLNPFEVRLSWLDVQISGDGRIVSRERMGFHTPCGRFKVARKTSVNSVNIFSHVVDCDRAARELYKIYPKKGSVWALHGEGSIDAEDRKRCYDIVVCLTSYNESNGLSMAYLEKVDGYKTVFRRQKKGSGAIIFLGKDDMCLVSHQIPARKLICDETPELLKDCWELDPASLPSDLLTIGGIDN* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1031 573 Pfam DnaJ domain 65 126 IPR001623 -
Vra11g1031 573 Coils Coil 252 283 - -
Vra11g1031 573 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 11 569 - -
Vra11g1031 573 PANTHER BNAC03G44070D PROTEIN 11 569 - -
Vra11g1031 573 SMART dnaj_3 64 121 IPR001623 -
Vra11g1031 573 Pfam Domain of unknown function (DUF3444) 341 542 IPR024593 -
Vra11g1031 573 PRINTS DnaJ domain signature 67 85 IPR001623 -
Vra11g1031 573 PRINTS DnaJ domain signature 85 100 IPR001623 -
Vra11g1031 573 PRINTS DnaJ domain signature 101 121 IPR001623 -
Vra11g1031 573 Gene3D DnaJ domain 52 147 IPR036869 -
Vra11g1031 573 ProSiteProfiles dnaJ domain profile. 65 129 IPR001623 -
Vra11g1031 573 SUPERFAMILY Chaperone J-domain 58 130 IPR036869 -
Vra11g1031 573 MobiDBLite consensus disorder prediction 266 297 - -
Vra11g1031 573 CDD DnaJ 65 118 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1031 Vra-Chr11 9348047 9351096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1031 5 178 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.732 1.59e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1031 - - gmx:100813361 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1031 11 9348047 9351096 Vra11g1031 11 9348047 9351096 ECH
Vra7g0196 7 2974367 2976847 Vra11g1031 11 9348047 9351096 PCT