Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1029 ATGGGCAGTAGTGAGATGGATAAAGCTCCAAAAGAGAAGGAGTCAAAGACGCCACCACCTATGTCACAGGAGCAGTCTTCAACCACCGCTACTGGAACAATTAATCCTGATTGGCCTGGATTTCAGGCATATTCTCCTATACCTCCACACAGTTTCTTGGCATCAAGTCCACAGGCTCACCCTTATATGTGGGGTGTCCAGCAATTTATGCCTCCCTATGGTACTCCACCACATCCATATGTTGCAATGTATCCACCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGCCCCTTTGCTATGCCTTCTCCAAATGGCATTGCTGAGGCTTCAGGAAACACTCCTGGCAGCATGGAAGCCGATGGTAAGCCTCCTGAGGTAAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAGTAATGAACATGGTAAAACAACGGGAACATCTGCTAATGGAATTCATTCAAAGAGTGGTGATAGTGCAAGTGAAGGCGAAGGTACTAGTGAAGGAAGTGATGCAAATTCTCAAAATGACTCTCAATTGAAATCAGGGGGCAGACAGGATTCTTTTGAAGATGAACCATCTCAAAATGGCACTTCAGCATATACTCCTCAAAATGGGAGCCTAAGTGCACCTCCTACTGCGGTCAATCAAACTCTGCCTATCATACCTATCTCTGCAGGTGGTGCTCCTGGCGCTGTTCCTGGTCCCACAACAAACTTAAATATAGGAATGGATTATTGGGGTACACCAGCTTCTTCCAACATTCCTGCACTTGCTAGAAAGGTTCCATCTACTGCAGTTGCTGGATCACGGGATAGTGTTCAATCACAACTCTGGCTACAGGATGAAAGAGAACTTAAAAGGCAAAGGCGAAAGCAGTCTAACAGGGAATCTGCTCGCAGATCCAGGTTGCGTAAGCAGGCCGAGTGTGATGAGTTAGCTCAGCGTGCTGAGGCTTTGAAGGAAGAAAATGCTTCTCTCCGGTCAGAAGTAAGCCGAATCAGGAGTGATTATGAGCAACTACTCTCCGAGAACACTGCTCTCAAGGAAAGACTTGGGGAATTACCTGCGAATGATGATCATCAAAGGTCTGGTAGGAATGATCAACATGTGGGTAATGATGCTCAACAGAATGGGCAGACAGAGGCTGTGCAGGGTGGTCACTAG 1221 0.4619 MGSSEMDKAPKEKESKTPPPMSQEQSSTTATGTINPDWPGFQAYSPIPPHSFLASSPQAHPYMWGVQQFMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFSPFAMPSPNGIAEASGNTPGSMEADGKPPEVKEKLPIKRSKGSLGSLNMITGKSNEHGKTTGTSANGIHSKSGDSASEGEGTSEGSDANSQNDSQLKSGGRQDSFEDEPSQNGTSAYTPQNGSLSAPPTAVNQTLPIIPISAGGAPGAVPGPTTNLNIGMDYWGTPASSNIPALARKVPSTAVAGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVSRIRSDYEQLLSENTALKERLGELPANDDHQRSGRNDQHVGNDAQQNGQTEAVQGGH* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1029 406 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 303 366 IPR004827 GO:0003700|GO:0006355
Vra11g1029 406 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 1 406 - -
Vra11g1029 406 SUPERFAMILY Leucine zipper domain 304 360 IPR046347 GO:0003700|GO:0006355
Vra11g1029 406 Gene3D - 304 358 - -
Vra11g1029 406 MobiDBLite consensus disorder prediction 146 232 - -
Vra11g1029 406 MobiDBLite consensus disorder prediction 111 232 - -
Vra11g1029 406 MobiDBLite consensus disorder prediction 387 406 - -
Vra11g1029 406 MobiDBLite consensus disorder prediction 371 386 - -
Vra11g1029 406 MobiDBLite consensus disorder prediction 1 18 - -
Vra11g1029 406 MobiDBLite consensus disorder prediction 1 46 - -
Vra11g1029 406 Pfam bZIP transcription factor 301 363 IPR004827 GO:0003700|GO:0006355
Vra11g1029 406 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Vra11g1029 406 MobiDBLite consensus disorder prediction 19 38 - -
Vra11g1029 406 Pfam Disordered region downstream of MFMR 135 274 - -
Vra11g1029 406 MobiDBLite consensus disorder prediction 365 406 - -
Vra11g1029 406 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 406 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vra11g1029 406 MobiDBLite consensus disorder prediction 302 324 - -
Vra11g1029 406 CDD bZIP_plant_GBF1 306 356 IPR045314 GO:0003700|GO:0006355
Vra11g1029 406 SMART brlzneu 301 365 IPR004827 GO:0003700|GO:0006355
Vra11g1029 406 Coils Coil 321 369 - -
Vra11g1029 406 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 308 323 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1029 Vra-Chr11 9335409 9346679 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1029 1 385 bZIP Transcription Factor Family AT2G35530 62.935 1.81e-165 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra11g1029 MFMR_assoc 1e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1029 K09060 - gmx:778122 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1029 11 9335409 9346679 Vra7g0256 7 3911347 3918322 PCT