Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1011 ATGGCTGAGAGTGCAGTGGGTTTTCTTCTCCAAAGGCTTGCACCTGTTTTTGAGAATAAGGTGAAATTGTTTACTGGAGTTCAAGCAGAAGTGATATGCCTGAAAGGACAGTTGGAGCTAATAAGAGCCTTCTTAAGGGTTGCAGATGCGTTAGAAGAGAGCGACGATGAACTTAAAGTTTGGGTTAAGCAAGTCAGAGATGTTGTTCATGAGGCCGAAGATCTTCTTGATGAATTGGAACTTGTCCAGCTACATAACCATACCAATGGATTCTCTATTTATCTCCGTATCAGGAATATGAAAGCTCGCTATCGGATTGCACATGACTTAAAAAGCATCAACTCGCGCTTGAAAGCTATTTCTTCAAGTCGTAAACTGGACTCTTCTTCAGTGGCTTCAACTTCCATTAATACAGGTACCGCATGGCACGATCAACGAGGAGATGCTCTTCTCCTGGACAACACTGATCTAGTGGGCATAGACAGGCCAAAAAAACAGGTTATAGGATGGTTGATCAATGGTTGTCCTGGACGAAAAGTGATTTCTGTTACTGGAATGGGAGGGATAGGAAAAACTACTTTGGTGAAGAAAGTATATGATGATCCAGACGTAAAAAAGCACTTCAAAGCTTGTGCTTGGGTGACTGTTTCTCAATCTTGTAAAATTGAGGAGCTTCTCAAAGACTTGGCCAAGAAGCTCTTTTCTGAGATAAGGCGACCAATTCCAGAGGGAATGGAAAGCATGTGTAGTGATAAGCTCAAGATGATGATCAAAGACTTGCTGCAGAGGAAGAGGTATCTAGTAGTATTTGATGATGTGTGGCATATGTATGAATGGGAAGCTGTCAAATATGCATTGCCAAACAACAATTGTAGTAGCAGGATCATGATCACCACTCGTAGATCTGATTTAGCCTTTACCTCCACAATAGAATCCAACGGTAAAGTGTATAACTTGCAACCCTTGAAACAAGATGAGGCTTGGGATCTATTTTGTAGGAACACCTTTCAGGGTGATTCATGTCCCTCATATTTGATTGACATCTGTAAATATATCTTAAGAAAATGTGAGGGTCTTCCTCTTGCAATTGTAGCAATCAGTGGTGTCCTGGCCACAAAAGACAAGCGCAGGATTGATGAGTGGGGTATGATTTGCCATAGTCTTGGAGCTGAAATTCAAGGCAATGGCAAACTCGATAATTTCAAAACTGTACTCAACCTCAGTTTTAATGATTTACCTTACCATTTGAAATACTGTTTCTTGTACTTAAGCATCTTTCCTCAGGACTATCTGATTCAGCGCATGAGATTGATTCGCTTATGGATAGCAGAAGGTTTTGTTGAAGCCAAAGAAGGAAAAACAAAGGAAGATGTTGCACATGATTACCTGAAGGAGCTCCTGAATAGAAACTTAATACAAGTAGCAGGTACAACAACTGATGGAAGGGTCAAAACTTTGCGAGTCCATGATCTTCTACGGGAGATCATCATTTTGAAGTCTAAAGACCAAAACTTTGCATCCATTGTCAACGAACAAAGTGCGGCATGGCCAGAAAAGATTCGGCGGCTTTCAGTGCACGGCACATTACCATATCGGCAGCAACATAGGTCTGTCTCTCAACTCCGTTCTTTTTTAATGTTTGGGGTTGGAGAATATGTACCCCTTGGAAAACTGTTCCCAAGTGGTTTTAAACTGCTTAGTGTCTTAGATTATCAAGATGCACCTTTGAAGAAGTTTCCACTAGCAGTTATTGATCTATATCATTTAAGATATCTAAGCTTAAGGAACACAAAGGTGAAAACAGTTCCAGGTCACATAATAGGGAAGTTGCATAATCTAGAAACACTGGATCTAAAGAAGACTTGTGTCAGAGAATTGCCTGTAGATATTCTGAAGCTTCAAAAGCTTCGTCATCTCCTTGTGTATCAGTTGAAATTCAAAGGTTATGCAGAGTTTCACTCCAAAGATGGTCTTAAGGCTCCCTCTGAAATAGGAAAATTAAAGTCACTACAAAAGCTTTGTTTTGTGGAGGCAAACCAAGACTGTGGAATGATAATAAGGCAATTAGGGGAGCTAAGTCAACTAAGAAGGTTGGGAATCTTGAAGCTTAGAGAGGAAGATGGGATGGCTTTCTGTTTGTCCATTGAGAGATTAACTAATCTTCATGCCCTCTCTGTTGCTTCTGAGGGTGAGAGTAAAGTCATTGATCTGACATTTCTCTGTTCACCACCTCCATTTCTTCAACGCTTGTATTTGTCAGGGCGTCTGCAAGAGTTACCAAGTTGGATACAGTCTCTTAACAGCCTAGCCAGGTTATTTCTGAAATGGAGCTGTTTAAAATACGATCCTCTAGTGCATCTGCAAGATCTTCCAAACCTTGCACATCTTGAACTACTTAAGGTTTATGATGGTGACGCTTTGCATTTTAGGAGTGGTAAGTTCAAGAAGCTCAAGGTTTTAGGTCTTGACAAATTTGACGGACTGAAAGAGGTGACAGTGGGGAAGGATGCAATGAACTGCCTAGAAAAACTGAGCATAGGGCGGTGTGAATTGTTGAAGAAGGTTCCATCAGGCATTGAGAATTTGACCAAGTTGAAAGTCCTTGAGTTTTTCGATATGCCAGATGAACTGATGAAAACTATATGTCCACATGGTCCCGGAAAAGATTACTGTAAAGTTTTACATATTCCAAATGTCTATTCTACCTACTGGAAAGATGGAGGTTGGGATGTTTATGCTCTGGACACTTTCAGCACAGATTGTTCTCCTAGATCAGGCACTCTCATAAGAAGTCATGAACCTCGTATTCAGTGGAAGGTGTAG 2823 0.4081 MAESAVGFLLQRLAPVFENKVKLFTGVQAEVICLKGQLELIRAFLRVADALEESDDELKVWVKQVRDVVHEAEDLLDELELVQLHNHTNGFSIYLRIRNMKARYRIAHDLKSINSRLKAISSSRKLDSSSVASTSINTGTAWHDQRGDALLLDNTDLVGIDRPKKQVIGWLINGCPGRKVISVTGMGGIGKTTLVKKVYDDPDVKKHFKACAWVTVSQSCKIEELLKDLAKKLFSEIRRPIPEGMESMCSDKLKMMIKDLLQRKRYLVVFDDVWHMYEWEAVKYALPNNNCSSRIMITTRRSDLAFTSTIESNGKVYNLQPLKQDEAWDLFCRNTFQGDSCPSYLIDICKYILRKCEGLPLAIVAISGVLATKDKRRIDEWGMICHSLGAEIQGNGKLDNFKTVLNLSFNDLPYHLKYCFLYLSIFPQDYLIQRMRLIRLWIAEGFVEAKEGKTKEDVAHDYLKELLNRNLIQVAGTTTDGRVKTLRVHDLLREIIILKSKDQNFASIVNEQSAAWPEKIRRLSVHGTLPYRQQHRSVSQLRSFLMFGVGEYVPLGKLFPSGFKLLSVLDYQDAPLKKFPLAVIDLYHLRYLSLRNTKVKTVPGHIIGKLHNLETLDLKKTCVRELPVDILKLQKLRHLLVYQLKFKGYAEFHSKDGLKAPSEIGKLKSLQKLCFVEANQDCGMIIRQLGELSQLRRLGILKLREEDGMAFCLSIERLTNLHALSVASEGESKVIDLTFLCSPPPFLQRLYLSGRLQELPSWIQSLNSLARLFLKWSCLKYDPLVHLQDLPNLAHLELLKVYDGDALHFRSGKFKKLKVLGLDKFDGLKEVTVGKDAMNCLEKLSIGRCELLKKVPSGIENLTKLKVLEFFDMPDELMKTICPHGPGKDYCKVLHIPNVYSTYWKDGGWDVYALDTFSTDCSPRSGTLIRSHEPRIQWKV* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1011 940 Gene3D - 321 408 IPR042197 -
Vra11g1011 940 Gene3D Ribonuclease Inhibitor 539 884 IPR032675 -
Vra11g1011 940 Pfam NB-ARC domain 163 410 IPR002182 GO:0043531
Vra11g1011 940 PRINTS Disease resistance protein signature 180 195 - -
Vra11g1011 940 PRINTS Disease resistance protein signature 260 274 - -
Vra11g1011 940 PRINTS Disease resistance protein signature 356 370 - -
Vra11g1011 940 PRINTS Disease resistance protein signature 608 624 - -
Vra11g1011 940 Gene3D - 151 311 IPR027417 -
Vra11g1011 940 Gene3D - 4 107 - -
Vra11g1011 940 Gene3D - 409 499 IPR036388 -
Vra11g1011 940 SUPERFAMILY L domain-like 487 876 - -
Vra11g1011 940 PANTHER DISEASE RESISTANCE PROTEIN RP 151 902 IPR044974 GO:0006952
Vra11g1011 940 PANTHER DISEASE RESISTANCE PROTEIN RP 1 127 IPR044974 GO:0006952
Vra11g1011 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 423 IPR027417 -
Vra11g1011 940 Coils Coil 62 82 - -
Vra11g1011 940 Pfam Rx N-terminal domain 5 90 IPR041118 -
Vra11g1011 940 PANTHER OS08G0539900 PROTEIN 1 127 - -
Vra11g1011 940 PANTHER OS08G0539900 PROTEIN 151 902 - -
Vra11g1011 940 CDD RX-CC_like 2 120 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1011 Vra-Chr11 9037181 9040920 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1011 179 803 WRKY Transcription Factor Family AT5G45050 22.754 1.02e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1011 K13457 - gmx:100805346 1639.78