Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1009 ATGGCAGATAGTTCAGTATCGTTTTTACTGGAAAAGCTGAATGCTTTGCTTCAAGAAGAAGTGAATCTGCAGAGGGGGGTTCGGGAAGATGTTCAGTACATCAAATATGAGCTTGAACGTCACAAAGCCATCTTAAGGGTGGCTGATGCTATGGAGGACAGAGACCCTGAACTCAAAGCATGGGTCAAAGGAGTGAGAGATGTTGCTCATGACATGGAAGATGCCATAGATGAATTCAACCTTCGCCTTGTTGATCAACATGGACAAGGCAACGGTTCTTCTCTTCATAGGTTTATTTTCGGCCTTAAGACCATGAGAGCTCGGCGTAGAATTGCTTTAGATATGCAAAGTATCAAATCCAAAGTGAACGTTATATCCCAGGGACGACCAGAGTTACCTGGCATAGGCTCCAGGTCAAGTCAACGGCTTTCTTCAAGGCTTGATAGCCAAGGAGATGCACTTCTGCTTGAAGAAGCTGATCTGGTGGGTATTGACAAACCCAAGAGGCAGCTTTGTGATTTGCTTTTCAATGAAGAACCAGGGAGGGCTGTGATTCCAATCTATGGAATGGGAGGGTTGGGAAAAACCACCTTGGCAAAACAGGTCTATGATGATCCAAAAGTGAAGAAGCGTTTTAGGATTCATGCTTGGATTAACGTTTCTCAGTCTTTTAAGCTACAAGAGCTCCTTAAAGACCTGGTTCAACAGCTGCATAATGTCATTGGAAAACCAGCTCCGGAAGCAGTTGGGCAAATGAAAAGTGAGGAGCTCAAAGAGTTGATCAAGAACTTGCTTCAAAGTAGTAGGTACCTCATTGTGCTGGATGATGTGTGGCATGTAAAGGTATGGGATTCTGTTAAACTTGCTTTGCCTAGTAGCAACCGTGGAAGTAGAGTGATGATTACTACGCGCAAAAAAGATATAGCTTTGTATTCTTGTGCTGAACTGGGTAAGGATTTTGTCCATGAATTCTTACCTGAGGAAGAAGCTTGGTATCTTTTCTGCAAGAAAACATTTCAGGGTAACTCATGTCCTCCTCATCTGGAGGAGGTTTGCAGAAAGATCTTAAAAATGTGTGGTGGGTTGCCACTAGCAATTGTGGCAATTGGTGGTGCTTTGGCTACCAGAGAGAGGGCAAACATTGAAGAGTGGCAGATGGTTTGCAGAAGTTTTGGGTCTGAAATTGAAGGCAATGACAAACTGGAGGATATGAAGAAAGTACTTTCCCTCAGTTTCAATGAGTTGCCTTACTATCTTAAATCCTGTTTGTTGTATCTAACCATCTTCCCTGAGTTTCATGCTATTGAGCACATGAGACTGATTCGCTTGTGGATTGCTGAAGGTTTTGTGAATGGTGAAGATGGAAGGACAAGGGAGGAAGTTGCAGACAGTTACCTCAAGGAGCTCTTGGACAGAAGTCTGCTGCAAGTTGTTTCAAAAACCAGTGATGGCAGAATGAAGACTTGTCGCATGCATGATCTTCTACGGGAGATTGTGAATTTGAAGGCAAAAGATCAAAACTTTGCGACAATAGCCAAAGATCAAGACATAATCTGGCCAGACAAAGTTCGACGCCTATCAATAATAAATACATTGGATAATGTGCGACAAAATAGAGCTTCATTCCAACTACGGTCTCTGCTAATGTTTGACTTATCAGATCCACTGGAGCATTTTTCAATACGTGGATTATGTTTCACTGGTTATAAGTTAATCAGGGTGTTAGATTTGCAGGATGCACCACTGGAGGTTTTTCCTGCTGAAATTGTCAACCTTTACCTTCTCAAGTATCTGAGTCTGAAGAATACAAAGGTGAAAAGCATTCCAGGTACCATTAAGAAGCTGCAGCAGCTAGAGACACTGGATCTTAAACAATCCCTTGTCACTGTACTACCAGTTGAAATTGTGGAGCTGCAACAATTACGACATCTTTTGGTGTATCGCTATGAGATTGAATCTTATGCTTATTTCCATTCAAGGCACGGCTTCAAGGTGGCTGCCCCTATAGGACTCATGAGATCTTTGCAAAAGCTATGTTTTATAGAGGCAGACCAGGCTTTGATGGTTGAGCTAGGAAAACTCACTCAACTCAGAAGGCTTGGCATCAGAAAGATGAGGCAACAAGATGGTGCTGCTTTAAGTTTATCCATTGAGAAGATGATCAATCTCCGCTCACTGTCCATCACAGCAATTGAAAAACATGAGATAATTGATATTCACAACATTTTCAGGCCTCCTCCTTATCTCCACCAGTTATACTTGAGTGGCCGTTTAGACATTTTCCCCCGCTGGATAAGTTCTATGAAGAATTTGGTCAGAGTGTTTCTGAAATGGAGCAGGCTAACAGAAGATCCTCTGGTACACCTTCAAGATTTGCCAAATCTAAGACATCTGGAATTTCTTCAAGTTTATGTAGGTGAGACATTGAATTTCAAGGCTAAAGGGTTTCCCAGTCTGAAGGTGTTAGGCCTTGATGATTTAAATGAACTCAAATCTATGACTGTGGAGGAGGGAGCAATGCCTGGTCTTAAAAGGCTCATCATCCAACGCTGTGGTTCACTGAAGCAGCTACCCTTTGGCATTGAACATCTAACGAAACTAAAATCAATTGAGTTTTTTGACATGCCTGAAGAATTGATCACAAGACTGCATCCAAAAGGAGGTCAAGAAGATTATTTGAGAGCTAAAAATGTACCAGCAGTTTATTCCTCATATTGGAGGGATGGAGGTTGGGATGTGTACTCATTGGAGACTCTAGAGGAGCGAGAGACTGATTTCAGTCGCAGTACTGCAATGAGAAGTCTTGAAAATTGCCCTCTCTGGAAGGCTTAA 2832 0.4234 MADSSVSFLLEKLNALLQEEVNLQRGVREDVQYIKYELERHKAILRVADAMEDRDPELKAWVKGVRDVAHDMEDAIDEFNLRLVDQHGQGNGSSLHRFIFGLKTMRARRRIALDMQSIKSKVNVISQGRPELPGIGSRSSQRLSSRLDSQGDALLLEEADLVGIDKPKRQLCDLLFNEEPGRAVIPIYGMGGLGKTTLAKQVYDDPKVKKRFRIHAWINVSQSFKLQELLKDLVQQLHNVIGKPAPEAVGQMKSEELKELIKNLLQSSRYLIVLDDVWHVKVWDSVKLALPSSNRGSRVMITTRKKDIALYSCAELGKDFVHEFLPEEEAWYLFCKKTFQGNSCPPHLEEVCRKILKMCGGLPLAIVAIGGALATRERANIEEWQMVCRSFGSEIEGNDKLEDMKKVLSLSFNELPYYLKSCLLYLTIFPEFHAIEHMRLIRLWIAEGFVNGEDGRTREEVADSYLKELLDRSLLQVVSKTSDGRMKTCRMHDLLREIVNLKAKDQNFATIAKDQDIIWPDKVRRLSIINTLDNVRQNRASFQLRSLLMFDLSDPLEHFSIRGLCFTGYKLIRVLDLQDAPLEVFPAEIVNLYLLKYLSLKNTKVKSIPGTIKKLQQLETLDLKQSLVTVLPVEIVELQQLRHLLVYRYEIESYAYFHSRHGFKVAAPIGLMRSLQKLCFIEADQALMVELGKLTQLRRLGIRKMRQQDGAALSLSIEKMINLRSLSITAIEKHEIIDIHNIFRPPPYLHQLYLSGRLDIFPRWISSMKNLVRVFLKWSRLTEDPLVHLQDLPNLRHLEFLQVYVGETLNFKAKGFPSLKVLGLDDLNELKSMTVEEGAMPGLKRLIIQRCGSLKQLPFGIEHLTKLKSIEFFDMPEELITRLHPKGGQEDYLRAKNVPAVYSSYWRDGGWDVYSLETLEERETDFSRSTAMRSLENCPLWKA* 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1009 943 Gene3D - 324 411 IPR042197 -
Vra11g1009 943 PRINTS Disease resistance protein signature 184 199 - -
Vra11g1009 943 PRINTS Disease resistance protein signature 264 278 - -
Vra11g1009 943 PRINTS Disease resistance protein signature 359 373 - -
Vra11g1009 943 PRINTS Disease resistance protein signature 613 629 - -
Vra11g1009 943 Pfam Rx N-terminal domain 6 88 IPR041118 -
Vra11g1009 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 426 IPR027417 -
Vra11g1009 943 Gene3D - 150 314 IPR027417 -
Vra11g1009 943 PANTHER DISEASE RESISTANCE PROTEIN RP 154 905 IPR044974 GO:0006952
Vra11g1009 943 PANTHER DISEASE RESISTANCE PROTEIN RP 1 137 IPR044974 GO:0006952
Vra11g1009 943 Gene3D - 5 112 - -
Vra11g1009 943 CDD RX-CC_like 2 126 IPR038005 -
Vra11g1009 943 Pfam NB-ARC domain 166 413 IPR002182 GO:0043531
Vra11g1009 943 Gene3D Ribonuclease Inhibitor 564 883 IPR032675 -
Vra11g1009 943 Gene3D - 412 502 IPR036388 -
Vra11g1009 943 PANTHER OS08G0539900 PROTEIN 1 137 - -
Vra11g1009 943 PANTHER OS08G0539900 PROTEIN 154 905 - -
Vra11g1009 943 SUPERFAMILY L domain-like 490 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1009 Vra-Chr11 9018545 9021748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1009 184 378 WRKY Transcription Factor Family AT5G45050 27.551 3.68e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1009 K13457 - gmx:100305458 1596.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1009 11 9018545 9021748 Vra11g1009 11 9018545 9021748 ECH