Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1008 ATGGGTCGGAAACACGACGCCGTTTTGGTCGACAAACCAGTCGCCGAAGAAGCACCCTACAGCCCCGAGCTCGACTCCGAGAAGAAGAAGAAGAAGAAAAAGAAGAACAAGAACAAAGAAAAGCAGCAAGAAAGCGAAAACAGCCCCAAACGAAAGCTCGACGAACTCGACCCGCAAAACGGCACCGAATCGAAGAAGAAGAAAAAGAAGAAACACCACGACTCCAAAGAGAATGCAGGGGAAGCCAACGTTGATAGGAACAACGACAACGGCGCTAATCGCGATGAAACGGTGGCGGACGGTTCTGTAGTGGTTACTGGAAAGAATGCCGGAGATGCCAAGTACGCGGCGGTGAAAAGCTTTTCGGATTCGGGACTGCCGGAGAATGTGCTGGAATGTTGCAAGGGTTTCGAGAAGCCTTCTCCAATTCAATCGCGGGCGTGGCCTTTCTTATTGGACCGCCGTGATTTGATTGGAATCGCTGCCACTGGATCAGGGAAAACTTTGGCGTTCGGGATACCGGCGATTATGCATGTTTTGGGAAAGCGGAAGGGTAAAGGTTCCAGGGGACGGAACCCTCTTTGCCTCGTGCTCTCTCCTACTCGAGAGCTAGCACAACAAATATCAGATGTCATCTGTGATGCGGGTAGTTCTTGTGGTGTGGAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGCCCGCAAATCTCCTCACTAAAATCTGGCATGGACATTGTCATTGGAACTCCTGGTCGTATTCAGGATCTAATTGAAATGGGTGTCTGTTGCCTCAAAGAAGTATCTTTCGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAATAGTCCGCTCTATACTGGGTCAGACAAGTTCTGATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGGCAGTTCATCACTTGGCTCAGGAGTTCATGGATCCCAATCCTGTAAAAGTTGTTGTAGGTTCAGAAGACTTGGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGATCGCGCTCGTGATAGGCGCCTGGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAGCAATCGAGTATTGGTCTTTGTTTTGTACAAAAATGAAGCCAAACGAGTTGAAAATATGCTTCAAGAAGGGGGTTGGAAGGTTGTTTCAATACATGGGGACAAAGCTCAACATGATCGCACAAAGGCACTCTCATTGTTCAAGAAGGGAAGCTGTCCTTTAATGGTTGCTACTGATGTGGCTGCACGGGGATTGGATATTCCAGATGTTGAAGTAGTGATAAACTATAGTTTTCCTCTGACTACAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTGAGGGAAGCAGGGCAAGTCGTACCCGATGACCTCCTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTACGGGGCGCACTTCAAGGAAATCCCTGTTGATGCTCCAAAGTCTCAAAAGAAAACATTTGACGACTCTGACGATGAATGA 1614 0.4721 MGRKHDAVLVDKPVAEEAPYSPELDSEKKKKKKKKNKNKEKQQESENSPKRKLDELDPQNGTESKKKKKKKHHDSKENAGEANVDRNNDNGANRDETVADGSVVVTGKNAGDAKYAAVKSFSDSGLPENVLECCKGFEKPSPIQSRAWPFLLDRRDLIGIAATGSGKTLAFGIPAIMHVLGKRKGKGSRGRNPLCLVLSPTRELAQQISDVICDAGSSCGVESICLYGGTSKGPQISSLKSGMDIVIGTPGRIQDLIEMGVCCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTSSDRQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRARDRRLVALLEKYHKSQSNRVLVFVLYKNEAKRVENMLQEGGWKVVSIHGDKAQHDRTKALSLFKKGSCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKKTFDDSDDE* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1008 537 CDD SF2_C_DEAD 339 471 - -
Vra11g1008 537 Pfam Helicase conserved C-terminal domain 353 462 IPR001650 -
Vra11g1008 537 MobiDBLite consensus disorder prediction 39 64 - -
Vra11g1008 537 Pfam DEAD/DEAH box helicase 142 310 IPR011545 GO:0003676|GO:0005524
Vra11g1008 537 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 7 523 - -
Vra11g1008 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 475 IPR027417 -
Vra11g1008 537 SMART ultradead3 136 342 IPR014001 -
Vra11g1008 537 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 271 279 IPR000629 -
Vra11g1008 537 Gene3D - 59 328 IPR027417 -
Vra11g1008 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 325 IPR014001 -
Vra11g1008 537 Coils Coil 24 47 - -
Vra11g1008 537 MobiDBLite consensus disorder prediction 1 100 - -
Vra11g1008 537 SMART helicmild6 381 462 IPR001650 -
Vra11g1008 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 501 IPR001650 -
Vra11g1008 537 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 119 145 IPR014014 GO:0003724
Vra11g1008 537 CDD DEADc 135 326 - -
Vra11g1008 537 Gene3D - 329 504 IPR027417 -
Vra11g1008 537 MobiDBLite consensus disorder prediction 74 93 - -
Vra11g1008 537 PANTHER BNAA08G07020D PROTEIN 7 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1008 Vra-Chr11 9009634 9014027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1008 118 470 Eukaryotic Initiation Factors Gene Family AT3G19760 33.521 1.09e-56 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1008 K14811 - gmx:100806057 927.161