Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1006 ATGGCAGCTTGCACTGTGTACTCAACACAATCTCTCAGCACAAATTGCTCCATCTCAACCCCATCAAAAACACAACTGAGTTTTCACCAAAAGCAGGTAGTATTCTACACCACAAGCAGGAGGAACAGCAAGAGGGGCATCAACAGTGGCAGAAGCTATGTGATAACATGTGCAGCAAGTGACCAACAGACAGTGGTGATTGGTCTGGCTGCTGACTCAGGTTGTGGAAAAAGTACCTTCATGAGGAGGCTCACCAGTGTGTTTGGAGGAGCAGCAGAACCACCAAAGGGTGGCAACCCTGATTCCAACACTCTCATCAGTGACACCACCACAGTCATATGCTTGGATGATTACCACTCATTGGATAGAACTGGCAGAAAGGAGAAGGGAGTCACTGCCCTTGACCCCAGAGCCAACGATTTTGATCTCATGTATGATCAAGTTAAAGCAATCAAAGATGGAATTGCTGTTCAAAAACCAATCTACAACCACGTCACTGGTCTCTTGGACCCCCCCGAGCTCATCAAACCTCCCAAAATCTTAGTCATTGAAGGTTTGCACCCAATGTTTGATTCTCGTGTCAGAGACCTCTTGGACTTTAGCATCTACCTAGACATTAGCAATGAGGTGAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAGCGTGGACACAGTCTTGAAAGCATCAAGGCTAGCATTGAAGCAAGAAAGCCTGATTTTGAAGCATACATTGATCCACAAAAGCAATATGCAGATGCTGTGATAGAAGTGTTGCCAACTCAACTGATTCCAGATGACAATGAGGGTAAGATTTTAAGAGTGAGGTTGATACAGAAAGAAGGAGTTAATTTCTTCAGTCCAGTTTACTTGTTCGATGAGGGCTCTACCATTTCATGGATACCATGTGGAAGGAAGCTTACATGCTCCTACCCTGGCATCAAATTCTCCTATGGACCAGACACTTACTACGGAAATGAGGTGTCAATTGTAGAAATGGATGGACAGTTTGACAGATTAGATGAACTAATATACGTTGAGAGTCACCTAAGCAACCTTTCTACCAAGTTCTATGGAGAAGTTACTCAACAGATGTTGAAGCATGCTGATTTCCCCGGCAGCAACAATGGCACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATCTATATGAACAGATAGTAGCCACCAGGGCTGAGACTCCAGTAGCTGCAAAAGCTTAG 1230 0.4439 MAACTVYSTQSLSTNCSISTPSKTQLSFHQKQVVFYTTSRRNSKRGINSGRSYVITCAASDQQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYDQVKAIKDGIAVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFEAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVNFFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFSYGPDTYYGNEVSIVEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIVATRAETPVAAKA* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1006 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 334 IPR027417 -
Vra11g1006 409 PANTHER PHOSPHORIBULOKINASE 6 408 - -
Vra11g1006 409 Gene3D - 61 301 IPR027417 -
Vra11g1006 409 CDD PRK 66 355 - -
Vra11g1006 409 ProSitePatterns Phosphoribulokinase signature. 215 228 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vra11g1006 409 Pfam Phosphoribulokinase / Uridine kinase family 66 264 IPR006083 GO:0005524|GO:0016301
Vra11g1006 409 PRINTS Phosphoribulokinase family signature 71 88 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vra11g1006 409 PRINTS Phosphoribulokinase family signature 180 198 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vra11g1006 409 PRINTS Phosphoribulokinase family signature 215 232 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vra11g1006 409 PRINTS Phosphoribulokinase family signature 233 256 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vra11g1006 409 PANTHER URIDINE KINASE 6 408 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1006 118 292 PRT Gene Family AT3G27440 25.281 1.36e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1006 K00855 - gmx:100807126 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1006 11 8991842 8995159 Vra11g1006 11 8991842 8995159 ECH