Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1003 ATGTCTGCAAACGTAAACTACGGCATGCCCCTCACTCACCCTCACTGGTTCTCACCAAAATCTGGAATTTACCATAGCAAGCATGCCCCTATGGACCTTCCCAGCGACCCTTTTCTCGATGTTGTCTCCTTCATTTTTTCCCACCGCCATGATGGGGTGTCGGCCCTCGTTGATTCTTCATCAGGGTGTTCCATTTCCTACTCAAAGTTGCTACCTTTAGTCAAATCCGTTGCCTCTGGTCTTCACAATATGGGTGTTTCGCAAGGTGATGTGGTTCTGATTCTTCTTCCAAATTCCATTTACTATCCCATTGTGTTCTTAGCCGTTCTCTATCTAGGAGCTATTGTCACATCGTTGAACCCTCTTAGTAGTGTCCATGAAATACGCAGACAGGTTGCTGAGTGTGGTGTGGGTTTGGCTTTTACTGTGCCTGAAAATTTTAAGAAACTAGAGCCATTGGGAATTTCTGTTATTGCTGTGCCAGAAAATGAGAAGGGTTTGAGACATGGTTGTTTTTCATGCTTTTGTTACTTGATTTCTTGTGACTTCGATTTGCCTCAGAAGCCTGTTATCAAGCAGGATGACACTGCTGGGATATTGTATTCTTCGGGTACTACTGGGGTGAGCAAAGGGGTTGTTCTGTCCCATAAAAATCTTATTGCTATGGTTGAGCTTTTTGTGAGGTTTGAAGCTTCTCAATATGAAGGCTCTTGCTTGAGAAATGTGTATCTGGCTGTTTTGCCAATGTTCCATGTGTATGGCTTGTCGCTTTTTGCTGTGGGATTGTTGTCTTTGGGTTCTACTGTCGTTGTGATGAGGAAATTTGACATAGATGAAGTTGTCAGGGTGATTGATGAATATAAAGTCACCCACTTTCCTGTTGTTCCGCCGATCTTGACAGCATTGATAACGAGGGCAAATGGTGTTAATGACTGTAAGTTGCAGAGTTTGATACAAGTCTCCTGTGGTGCAGCGCCTTTGAGCTCAGGAGTTGTTGGTGATTTTCTCCGAACTTTTCCCGCTGTTGATTTTATACAGGGTTATGGAATGACTGAGTCAACAGCCGTAGGAACACGTGGCTTCAATACTGAAAAGTTTCGAAATTATTCCTCAATAGGTTTATTGGCTCCAAACATGGAGGCAAAAGTGGTAGACTGGAATACTGGTTCATTTTTGCCCCCTGGCAGCAGTGGTGAGCTTTGGTTGAGAGGGCCTTCAATTATGACGGGGTACTTGAATAATGAAGAAGCTACAATGTCTACAATTGATAGAGATGGTTGGCTACATACTGGAGATGTTGTTTATTTTGATAATGATGGATACTTATACATAGCTGATCGATTGAAAGATATCATCAAATACAAGGGCTTTCAGATTGCTCCTGCTGATTTAGAAGCTGTGTTAATTTTGCATCCTGAAATAGTTGATGTTGCTGTTATAGGTGCTACGGATGAAGAAACTGGTGAGATTCCAGTGGCATTTGTGGTAACAAAGGTTGGAAGTGTGCTATCTCCGAAGGATGTTATGGATTATGCTGCTGAGCAGGTTGCTCCATATAAGAAGATTAGGAAAGTGTTCTTCACCAACAAGATACCAAGGTCTGCGACTGGGAAGATCCTAAGAAAGCAACTGAGGAATTGCTTGACTTCTAAACTATGA 1659 0.4262 MSANVNYGMPLTHPHWFSPKSGIYHSKHAPMDLPSDPFLDVVSFIFSHRHDGVSALVDSSSGCSISYSKLLPLVKSVASGLHNMGVSQGDVVLILLPNSIYYPIVFLAVLYLGAIVTSLNPLSSVHEIRRQVAECGVGLAFTVPENFKKLEPLGISVIAVPENEKGLRHGCFSCFCYLISCDFDLPQKPVIKQDDTAGILYSSGTTGVSKGVVLSHKNLIAMVELFVRFEASQYEGSCLRNVYLAVLPMFHVYGLSLFAVGLLSLGSTVVVMRKFDIDEVVRVIDEYKVTHFPVVPPILTALITRANGVNDCKLQSLIQVSCGAAPLSSGVVGDFLRTFPAVDFIQGYGMTESTAVGTRGFNTEKFRNYSSIGLLAPNMEAKVVDWNTGSFLPPGSSGELWLRGPSIMTGYLNNEEATMSTIDRDGWLHTGDVVYFDNDGYLYIADRLKDIIKYKGFQIAPADLEAVLILHPEIVDVAVIGATDEETGEIPVAFVVTKVGSVLSPKDVMDYAAEQVAPYKKIRKVFFTNKIPRSATGKILRKQLRNCLTSKL* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1003 552 Gene3D - 450 550 IPR045851 -
Vra11g1003 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 551 - -
Vra11g1003 552 Gene3D - 22 449 IPR042099 -
Vra11g1003 552 SUPERFAMILY Acetyl-CoA synthetase-like 50 548 - -
Vra11g1003 552 CDD 4CL 33 544 - -
Vra11g1003 552 Pfam AMP-binding enzyme 50 454 IPR000873 -
Vra11g1003 552 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Vra11g1003 552 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 11 551 - -
Vra11g1003 552 Pfam AMP-binding enzyme C-terminal domain 464 538 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1003 Vra-Chr11 8936455 8942449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1003 14 552 Monolignol Biosynthesis Gene Families AT4G19010 60.886 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1003 K01904 - gmx:100804808 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1003 11 8936455 8942449 Vra11g1003 11 8936455 8942449 ECH