Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0999 ATGGAAGGTGGAGGAAGAGAAAGTTATAATGGGGTGGTAATGACTATGACACGAGACCCGAAACCAAGGCTAAGATGGACAGCAGATCTTCATGATCGTTTTGTAGATGCAGTCACAAAGCTTGGTGGCCCCGATAAGGCCACTCCCAAGTCTGTTCTGAGGTTAATGGGGTTGAAAGGTCTGACACTGTATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAGCAGGCTCGAAAACAAAACGAGGAACTGAACAAAGAGAACAGTAGATGTTCGTTTGTAAATTTTAGCACTCGTTCTTCAGGGCCTAACACCACTTACAGAGGTGATAATGAAGGGGGAGAAACCCCAATAGCAGAAGCACTGAGGAATCAGATTGAAGTTCAAAAGAGATTGGAAGAGCAGCTCGAGGTACAGAAGAAGTTGCAGATGAGAATAGAGGCACAAGGGAAGTATTTGCAAGCAGTGTTAGAAAAAGCTCAGAGAACCCTTTCCTTGGATGGATCAGCAAGTCTTGAAGCATCAAGAGCTCAGTTGACTGAATTCAACTCTGCTTTGTCAAATTTCATGGAAAATATGAATAAAGATAGCAAAGAAAACATAATAGAAGTGACCGGTTTTTATAATAAGAACCATGGCTCAGCTTTCCATTATGAGGAAGTAGGAAGAGAACAAAATAGGAATCAAAAGCCAAAGATTGAAGGGGGTTCAATACAGTTTGACTTAAACATTAAGGGTAGCAATGATCTCATATCTTCTGGTGGGGCTGAAATGGATGTCAATATGATTTCATATAGGGGGTAA 810 0.4123 MEGGGRESYNGVVMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQARKQNEELNKENSRCSFVNFSTRSSGPNTTYRGDNEGGETPIAEALRNQIEVQKRLEEQLEVQKKLQMRIEAQGKYLQAVLEKAQRTLSLDGSASLEASRAQLTEFNSALSNFMENMNKDSKENIIEVTGFYNKNHGSAFHYEEVGREQNRNQKPKIEGGSIQFDLNIKGSNDLISSGGAEMDVNMISYRG* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0999 269 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Vra11g0999 269 Gene3D - 20 78 - -
Vra11g0999 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 255 - -
Vra11g0999 269 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
Vra11g0999 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 78 IPR017930 -
Vra11g0999 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 255 IPR044848 GO:0003700
Vra11g0999 269 Coils Coil 121 151 - -
Vra11g0999 269 Pfam MYB-CC type transfactor, LHEQLE motif 119 165 IPR025756 -
Vra11g0999 269 SUPERFAMILY Homeodomain-like 21 78 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0999 Vra-Chr11 8903579 8906241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0999 12 190 G2-like Transcription Factor Family AT3G24120 54.054 8.03e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra11g0999 Myb_DNA-binding 2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0999 - - gmx:100810146 474.937