Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0987 ATGATTGGCATGGCTTCTTCAAGCTCTCTCTTGAGGATGGAAGAAATAGCAGGGAAAGGAAGAGGTCTAGTTGCAGAAAAATCCTTGAAAGCAGGTCAAATAATTCTCACTGAATCCCCTCTCATTCTCTACTCAGCTTCTCCTCTCTATGCACCATCTTCTTCACCTTTCACCAACTGTGATCACTGCTTCAGAATCTTACCCTCTCACACAACCATTTTCCGATGCCCCTCTTGCTCCCACCACACTTTCTGCTCCCAAAGATGTCTCTCGCTTGCACAAAACTCCTCACACTCCAATTGGGTATGCAAAGCTCTCATCTTTCTTCTTCAACACCCCAACCCAACGCTCCTTCAACAACACCCTCCAGAACGCCAAGTTCAAGCTCGTTTCATTGTAGCTTCTCACAACCTCTTCCTTCAATCCCCTTCTCAACTTCACACTTTCCTCTCTCTTCATGGCACTCCAGATACTGCCATTTTTTATGTTGCCAAGTTTCTCCATTCTCTAATCTCACCTCTTTTCCCACCCGAGGGTCAACTTTCTGTAGATCTCACTGCACAACTTCTTGCAAAGGACAGACTCAACTCCTTCTGCTTAATGGACCCTTATTCCCCTGATGGGCCTCAGAGATCCATCAAAGCTTATGCTATTTACCCCAAAGCCACGTTCTTCAACCATGATTGTGTTCCCAACGCCTGCAGATTCGATTATGTGGACACTGGTGATGAACACAACACTGACATAGTTTTTAGGTTGATCGAGGATGTTCCTGCTGGGAAAGAGATCTGCATCAGCTATTTCAGGATTGGAAGGGATTATTGCACCAGAAAAAGGATCTTGATGGAGGATTATGGCTTCACTTGTGGATGTGATAGGTGCAAGATCGAAGCAAATTGGGGAGAAAACCAGGGGGAGATGAACAGTGACCTGCCACACGTGCGGTTCCTTCAAAAGCATGTTTGTGAGAGGAAGAACTGTGCTGGCACAATGGCTCCTTTGCCTCCAAAAGATGATGTGCCTTCTAATGTTCTGGAGTGTAACTTCTGTGGCAATTTAAAAGAAATATGA 1071 0.4538 MIGMASSSSLLRMEEIAGKGRGLVAEKSLKAGQIILTESPLILYSASPLYAPSSSPFTNCDHCFRILPSHTTIFRCPSCSHHTFCSQRCLSLAQNSSHSNWVCKALIFLLQHPNPTLLQQHPPERQVQARFIVASHNLFLQSPSQLHTFLSLHGTPDTAIFYVAKFLHSLISPLFPPEGQLSVDLTAQLLAKDRLNSFCLMDPYSPDGPQRSIKAYAIYPKATFFNHDCVPNACRFDYVDTGDEHNTDIVFRLIEDVPAGKEICISYFRIGRDYCTRKRILMEDYGFTCGCDRCKIEANWGENQGEMNSDLPHVRFLQKHVCERKNCAGTMAPLPPKDDVPSNVLECNFCGNLKEI* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0987 356 Gene3D SET domain 22 295 IPR046341 -
Vra11g0987 356 Pfam SET domain 20 267 IPR001214 GO:0005515
Vra11g0987 356 ProSiteProfiles SET domain profile. 9 268 IPR001214 GO:0005515
Vra11g0987 356 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 2 354 IPR044238 -
Vra11g0987 356 Gene3D - 120 197 - -
Vra11g0987 356 CDD SET_SMYD 195 294 - -
Vra11g0987 356 Gene3D - 59 119 - -
Vra11g0987 356 SMART set_7 9 274 IPR001214 GO:0005515
Vra11g0987 356 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 2 354 - -
Vra11g0987 356 SUPERFAMILY SET domain 13 295 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0987 Vra-Chr11 8769790 8771100 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra11g0987 SET 6.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0987 - - gmx:100808530 577.785