Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0985 ATGTTTACATGCATAGCGTGTACGAAGCAAACGGCGGAGGAAGGGGAAGAAGGTTGTGAGAGTGGCACGTCGAGTACAAAAGAAGTTGTCAAAAGTCTGAGTGCACAGTTAAAGGATATGGTACTGAAGTTTTCAGGTTCTTACAAGCAGTGCAGACCTTGCACAGGGTCCAGTGCCTACAAGAAAGGACAAAGGCCATATCCTGACTTTGACACCATTTCAGAAGGGGTTCCATACCCCTATATTGGAGGAGCAAGCTCAACTTCAACCCCTGCTTGGGACTTCACAAGCTCCTATATCCCTGGTGGTAGATCAGACCAAAGATTTATGGGTGGTTTGAATGGTGATAGAACCTCTAGAGGCCCTGAGTCAGCACCAGCATGTGATGTTGTTGTTGAGGAAGAGGATGAAACCAAGGAGTGGATGGCACAGGTGGAACCAGGTGTTCACATTACCTTTGTGTCTCTTCCTAATGGGGGAAATGATCTCAAAAGAATTCGCTTCAGCCGAGAGATTTTTGACAAGTGGCAAGCTCAAAAATGGTGGGGTGAGAATTATGACAGAATTATGGAGCTTTACAATGTCCAGAGATTCAATCGACAAGCTCTTAACACTCCTTCCAGATCTGAGGATGAGCAAAGAGATTCTTCTTACTCAAGACTGACATCTGGACAAGAAAGCCCGGGGTCGATGTCGTTGAAGGAATGGACACCAAGGAATCACTATAAACCCTCGTTGAATAACCAATCTGAAGCTATGGATCAAGGTGGTGGTCCAAACTTCCCAGCAGGATCATCTGTGGAAGCATCTAGGACAACCACTTCTTCTAGAGATGAGCCTTCAATGAGCAATGCCAGTGACCTGGAGGCAGAATGGATTGAGCAAGATGAACCTGGAGTTTACATCACGATCAGGCAACTAGCTGATGGAACTAAGGAGCTTCGTCGTGTCAGATTCAGCCGGGAGAGATTTGGAGAGGGGCATGCAAAGAAATGGTGGGAAGACAACAGAGAAAGAATACAAGCTCAATACCTTTGA 1038 0.4615 MFTCIACTKQTAEEGEEGCESGTSSTKEVVKSLSAQLKDMVLKFSGSYKQCRPCTGSSAYKKGQRPYPDFDTISEGVPYPYIGGASSTSTPAWDFTSSYIPGGRSDQRFMGGLNGDRTSRGPESAPACDVVVEEEDETKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREIFDKWQAQKWWGENYDRIMELYNVQRFNRQALNTPSRSEDEQRDSSYSRLTSGQESPGSMSLKEWTPRNHYKPSLNNQSEAMDQGGGPNFPAGSSVEASRTTTSSRDEPSMSNASDLEAEWIEQDEPGVYITIRQLADGTKELRRVRFSRERFGEGHAKKWWEDNRERIQAQYL* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0985 345 ProSiteProfiles BRX domain profile. 139 194 IPR013591 -
Vra11g0985 345 Pfam Transcription factor regulating root and shoot growth via Pin3 289 344 IPR013591 -
Vra11g0985 345 Pfam Transcription factor regulating root and shoot growth via Pin3 139 193 IPR013591 -
Vra11g0985 345 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 345 IPR044532 -
Vra11g0985 345 Pfam Transcription factor BRX N-terminal domain 22 54 IPR027988 -
Vra11g0985 345 MobiDBLite consensus disorder prediction 265 283 - -
Vra11g0985 345 MobiDBLite consensus disorder prediction 218 234 - -
Vra11g0985 345 ProSiteProfiles BRX domain profile. 290 345 IPR013591 -
Vra11g0985 345 MobiDBLite consensus disorder prediction 203 286 - -
Vra11g0985 345 PANTHER BREVIS RADIX-LIKE PROTEIN-RELATED 1 345 - -
Vra11g0985 345 MobiDBLite consensus disorder prediction 241 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0985 Vra-Chr11 8749979 8757285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0985 1 345 Major Intrinsic Protein MIP AT1G31880 64.507 5.56e-156 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0985 - - gmx:100809614 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0985 11 8749979 8757285 Vra11g0985 11 8749979 8757285 ECH