Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0977 ATGAAGGAACCATCAAAGGCATGGAGACCCTTCACTGCAAATTGCTGCTCCACAGAGGATCAAACCGTGTTCAAGAACTTCAGCAGGTGCAAGCCTTCACGTTCTGATTTGTCAAAGAACATTGCTCCTTTGCCATCGTTCAGGAGGCTCTCCTTCTCCGATCTCAGTCGTTCCTCGTCTGTGCGAATCAATGAGGATCTTGCACAGTCTTTTGGCTCGGATTTGTTTGATTTTCAGCTGAGTGAGCTCCGTGCCATAACTCAGAATTTCAGCAGCAACTTCTTGCTGGGAGAAGGAGGGTTTGGAACTGTGCATAAGGGCTACGTAGATGATCATCTCAGGCTTGGTTTGAAGGCACAACCTGTTGCTGTCAAGCTTCTTGACATTGAAGGCTTGCAAGGACACCGTGAATGGCTGGCAGAAGTGATTTTTCTTGGGCAGTTAAGACACCCCAATTTGGTTAAGTTGATTGGGTATTGTTGTGAAGATGAAGAACGATTACTTGTCTATGAATTCATGCCACGAGGAAGTTTGGAGAATCACCTCTTCAGAAGGCTAACCTCAATTCCATGGGGGACAAGATTAAAAATTGCAATAGGTGCTGCTAAAGGCCTTTCCTTCTTGCATGGAGCTGAGAAACCAGTCATTTATAGAGACTTCAAGACTTCCAATGTTTTGCTTGATTCAGAGTTCACAGCGAAATTGTCAGATTTTGGACTTGCTAAAATGGGGCCAGAGGGATCCAACACACATGTTTCAACCAGAGTAATGGGCACTTATGGATATGCAGCACCAGAATACATCTCAACAGGGCATTTAACAACCAAAAGTGATGTCTACAGCTTTGGGGTAGTCCTGCTAGAACTGCTGACAGGAAGAAGAGCAACAGACAAAACAAGACCAAAGACTGAGCAAAACCTTGTGGATTGGTCAAAACCTTACTTGAGTAGCAGTAGGAGGTTGAGGTACATTGTCGATCCAAGGCTTGCAGGCCAATATTCTGTGAAGGGTGCAAAGGAAATTGCCCGTTTGGCATTGCAATGCATAAGTTTGAATCCTAAAGACAGACCAAGAATGCCAATGATTGTTGAAACTCTTGAAGGCTTACAACAGTACAAGGACATGGCTGTTACCAGCGGACACTGGCCAGTGTCACAAAAATCTACTAGGAATAAAGTCTCCAACAATAAGACGAATATGAACACTAGAGCCGGTGCAAACCACAAGCAACCATCACCAGTTCTGAGCAAAAAAACTTGA 1260 0.4444 MKEPSKAWRPFTANCCSTEDQTVFKNFSRCKPSRSDLSKNIAPLPSFRRLSFSDLSRSSSVRINEDLAQSFGSDLFDFQLSELRAITQNFSSNFLLGEGGFGTVHKGYVDDHLRLGLKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRLTSIPWGTRLKIAIGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSEFTAKLSDFGLAKMGPEGSNTHVSTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNLVDWSKPYLSSSRRLRYIVDPRLAGQYSVKGAKEIARLALQCISLNPKDRPRMPMIVETLEGLQQYKDMAVTSGHWPVSQKSTRNKVSNNKTNMNTRAGANHKQPSPVLSKKT* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0977 419 Pfam Protein tyrosine and serine/threonine kinase 96 366 IPR001245 GO:0004672|GO:0006468
Vra11g0977 419 ProSiteProfiles Protein kinase domain profile. 90 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0977 419 SUPERFAMILY Protein kinase-like (PK-like) 73 369 IPR011009 -
Vra11g0977 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Vra11g0977 419 Gene3D Phosphorylase Kinase; domain 1 53 172 - -
Vra11g0977 419 Gene3D Transferase(Phosphotransferase) domain 1 173 390 - -
Vra11g0977 419 MobiDBLite consensus disorder prediction 381 419 - -
Vra11g0977 419 PANTHER OS01G0588500 PROTEIN-RELATED 29 406 - -
Vra11g0977 419 CDD STKc_IRAK 96 369 - -
Vra11g0977 419 PANTHER SERINE/THREONINE-PROTEIN KINASE, ACTIVE SITE PROTEIN-RELATED 29 406 - -
Vra11g0977 419 ProSitePatterns Protein kinases ATP-binding region signature. 96 125 IPR017441 GO:0005524
Vra11g0977 419 MobiDBLite consensus disorder prediction 380 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0977 Vra-Chr11 8619304 8622551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0977 78 394 Glycoside Hydrolase AT3G07070 50.765 1.39e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra11g0977 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0977 - - gmx:100814241 782.326