Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0965 ATGGCCGAAGCATTGTTGGGATTTGTGCTTCAAAATTTGGGATCTTTTGTTCAATACCAACTTACATCTTGTTGGGGTGTTGATCAACAGACTCATAAACTGTCCAGCAACCTCACCGCAATCCGTGCTGTCCTCAGAGATGCTGAGAGAAAGCAAATGACAAATCATGCTGTGAAGGATTGGCTGCAGAAACTCACAGATGCAGCATATGTATTGGATGATATCTTGGATGAATGTTCAATTCACTTTGCAAAGATGCACTCTGATGATGGACATACTTCATGCTTATCTCGTCTCCATCCTAATGACATTCTCTTTCGTTTCAATATTTGCAAGAGGATGAAAGACATCACCCAAAGATTTCATGACATTCATGAAGAAAAGAGCACGTTTAATTTAGAACCTGGTCTCACAGAAGTGGTGCAAAGAGTGGATGATGATTGGCGCCAAACTAGCTCTGACATTACAGAACCTGTAGTTTATGGCAGAGACCACGATCGAGATCAAATTGTGAAGTTTCTTCTTGAAGACGCTAATAACCGTGAAGAGCTCTCTATCTTTCCTATAGTTGGTATGGGTGGACTTGGAAAAACAACATTAGCCAAGCAGGTTTTCAATGATCACAGGGTATGCAAACATTTTGACTTGACAATTTGGGTTTGTGTTTCTGATGATTTCAACACCATGACAATACTACAATCCATCTTAGAATGCATCACCAGACAAAATCCCAATCTCAATAGCTTAGAAGCAATGCGGAAAAAGGTTGAAGAAGTGTTGCATGGGAAGAGGTATTTACTTGTTCTTGATGATGTGTGGAATGAAGACCGAGAAAAATGGGAGCAGTTGAAGGGAAAGTTGCAGTGTGAAAGAGCAGCAAAAGGAGCTACCATTTTGGTCACTACTCGACTCGAGGAAGTTGCTTTCATCATGCAGACGCATCCTGCTTACCATTTGAAAGAATTGTCAGGAGATGAAAGTTGGTGGTTGTTCAAATACCATGCGTTTGGACCAAACCGAGAAGAAATGGGAGAACTCGTATCAATTGGCAAAGAGATAGTGAGAAAATGCGTTGGTTCGCCGCTTGCAATCAAAACATTGGGAAGCCTACTACGTGATGAAAGTGAAGTAAAACAGTGGCAGAATGTAAAGGAAAGTGAGATTTGGGATATACGGGAGGAAAGTAGTTCTGCGACAGGTGAGGAAAATTCTATCATGCGTGCTTTGAAATTAAGCTATTTTAATTTGGAGTTGTCATTGCGGAGATGCTTTTCGTTTTGTGCAATTTTCCCCAAAGATTTTGAAATAGACAAGGAAGAATTGATTCATCTCTGGATGGCTAATGGATTTATTGAAAGTAAAAGAAACATAGAAGTGGAGGATGTTGGAAATAAAGTGTGGAATAAATTATACCGTAGATCATTTTTTCAGGAAGCAAAGCGTGATGAATTTGGTATAATAACAACTTTCAAGATGCATGATCTATTACATGATCTTGCCCAGTCTATTATGGGTGAAGAATGTGCGGCTTTTGTGGAAGGAAGGTTGACTCCGTTTTCAAGTAGAGTTCACTATTCAACCTTGTTATCTTCTGATGTTTCTTCTAATGTTTCTTTTCGACAATTCATGCATGCTTTCAAGAAAGTTCAATCCCTGCGGACTTTTCTTGATTTGGGGCCTTCTTTTCGTGTTAGTGATTCTGACCTGGTGCCATCAAACCATTCTCTCCGAGCATTATGCACTCAATTTTCTTGGTTGTCCCCACTCAAGAATTTAACACATTTGAGATATTTGAGTTTGATTCATTTTCAAGGAAGCTTAAATAACTCAATTTGTCAAATGCGGAAATTGCAAATTCTGAAGTTGCAAAGGTGCAGATATCTTTGTGGACTGCCCAAAAACTTGACACAATTACAAGATCTAAGACATATTGTGATGAATGATTGTAGAGAAGTAGAAAAGTCGCTTCCCAAAATTAGCAAGTTAAGGCATCTAAGAACACTAAGCATTTTCGTGGTGGGTTCAAAGCCAGGGTGTGGCTTAGCAGAGTTGCATAGCTTAAATCTGGGAGGCACGCTAAGAATCAGAGGCCTTGAGAACGTCCTCAATGAATTGGATGCTAAAGAAGCAAATTTGATTGGTAAGAAGGAGTTGAATATCCTGGAGTTGTCATGGGATGGTAATGCTAATCCAAAAGGTAGTAATGTTAGTGTGGAGAGAGTATTGGAAGCCCTAGAACCTCCCTCAACTCTCAAGAGTTTTGAAATAAATGGATATCAGGGAAGGCAGTTATCGAGTTGGATGAGAAATAGTGGAGTTTTGAGAGACTTGGTGGATGTTAGACTCTCCGACTGTGAGAACTGTGAAGAGCTTCCCCCACTTGGTAAACTAGCACACTTGAAAAGGCTAAAGGTGAGTGGAATGAAAAATGTGAAGTGGATAGATGGTGAGACGTATGACGGCGTGGAAGAGAAGGCATTTCCATCGTTGGATGAATTGAGTGTGTATAATTTACCAAATTTGGAGAGGTTGTTGAGTGATGAAGGAGTAGAGATGCTTCCTCGTCTTTCCCAATTAAGAATTAATGGTGTGTTGAACTTTAAAGTCCCACGTCTTCCTTGTGTTGAGACACTTGATGCTAGAGGAATTGAGGATGTGACTTCTTTCATGGAAGGGGTTGGGGAGAATATGGCTTGTCTAAAGACCTTAAGGATTATAAACATTAAAGGAGTGGTGGTATTACCTGACGAATTCAGCAGATTGGGTGCACTGCAGGAACTATACATTGAAGAATGGTATGATGTGGAGTATTTTCCAGAACACGTGCTGGAAGGCCTAACTTCTCTTCGAATTTTGACCATTGAAAACTGTAAGAAATTGAAATCCTTGTCTGAAGGTGTGCGACATTTGGCTTGTCTTCATGGTTTGAGGATCAGTAAATGTCCAGAGCTGGTGGCTCTACCAAGCAATATGAGTCAACTATCTGCCCTGCGGGAGGTTTCAATCGAGAGCTGCTCTACATTACCAGATGGTTTACAACGTGTCCCCTCCCTACGAGTTTTACATATAGAGGAATGCACGTGTACTTCATTGCCGGACTGGCTGGGAGACATTACTACTCTTGAAACATTAGGCCTTTTTTACTGTGAGGAGTTGAGGTCACTGCCGAGTAGCATTCAACGCCTCACCAACTTGTCTCATTTAATAATAGAGTACAGTCCTTATCTGAAGAAGCGATGTAATAAGGAAACAGGAGAGGATTGGCAATACATAAGCCACATTCCAAAATTAGAACTATTTTTCACGAGGAGACTGACGTTTTGTGGATTTTAA 3333 0.405 MAEALLGFVLQNLGSFVQYQLTSCWGVDQQTHKLSSNLTAIRAVLRDAERKQMTNHAVKDWLQKLTDAAYVLDDILDECSIHFAKMHSDDGHTSCLSRLHPNDILFRFNICKRMKDITQRFHDIHEEKSTFNLEPGLTEVVQRVDDDWRQTSSDITEPVVYGRDHDRDQIVKFLLEDANNREELSIFPIVGMGGLGKTTLAKQVFNDHRVCKHFDLTIWVCVSDDFNTMTILQSILECITRQNPNLNSLEAMRKKVEEVLHGKRYLLVLDDVWNEDREKWEQLKGKLQCERAAKGATILVTTRLEEVAFIMQTHPAYHLKELSGDESWWLFKYHAFGPNREEMGELVSIGKEIVRKCVGSPLAIKTLGSLLRDESEVKQWQNVKESEIWDIREESSSATGEENSIMRALKLSYFNLELSLRRCFSFCAIFPKDFEIDKEELIHLWMANGFIESKRNIEVEDVGNKVWNKLYRRSFFQEAKRDEFGIITTFKMHDLLHDLAQSIMGEECAAFVEGRLTPFSSRVHYSTLLSSDVSSNVSFRQFMHAFKKVQSLRTFLDLGPSFRVSDSDLVPSNHSLRALCTQFSWLSPLKNLTHLRYLSLIHFQGSLNNSICQMRKLQILKLQRCRYLCGLPKNLTQLQDLRHIVMNDCREVEKSLPKISKLRHLRTLSIFVVGSKPGCGLAELHSLNLGGTLRIRGLENVLNELDAKEANLIGKKELNILELSWDGNANPKGSNVSVERVLEALEPPSTLKSFEINGYQGRQLSSWMRNSGVLRDLVDVRLSDCENCEELPPLGKLAHLKRLKVSGMKNVKWIDGETYDGVEEKAFPSLDELSVYNLPNLERLLSDEGVEMLPRLSQLRINGVLNFKVPRLPCVETLDARGIEDVTSFMEGVGENMACLKTLRIINIKGVVVLPDEFSRLGALQELYIEEWYDVEYFPEHVLEGLTSLRILTIENCKKLKSLSEGVRHLACLHGLRISKCPELVALPSNMSQLSALREVSIESCSTLPDGLQRVPSLRVLHIEECTCTSLPDWLGDITTLETLGLFYCEELRSLPSSIQRLTNLSHLIIEYSPYLKKRCNKETGEDWQYISHIPKLELFFTRRLTFCGF* 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0965 1110 SUPERFAMILY L domain-like 491 863 - -
Vra11g0965 1110 PANTHER DISEASE RESISTANCE PROTEIN RP 31 966 IPR044974 GO:0006952
Vra11g0965 1110 Pfam Rx N-terminal domain 6 89 IPR041118 -
Vra11g0965 1110 Gene3D - 6 122 - -
Vra11g0965 1110 Gene3D - 321 417 IPR042197 -
Vra11g0965 1110 Gene3D - 419 502 IPR036388 -
Vra11g0965 1110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 427 IPR027417 -
Vra11g0965 1110 Pfam NB-ARC domain 165 413 IPR002182 GO:0043531
Vra11g0965 1110 Gene3D - 148 315 IPR027417 -
Vra11g0965 1110 CDD RX-CC_like 2 118 IPR038005 -
Vra11g0965 1110 PRINTS Disease resistance protein signature 186 201 - -
Vra11g0965 1110 PRINTS Disease resistance protein signature 259 273 - -
Vra11g0965 1110 PRINTS Disease resistance protein signature 357 371 - -
Vra11g0965 1110 PRINTS Disease resistance protein signature 944 960 - -
Vra11g0965 1110 PANTHER OS05G0414200 PROTEIN 31 966 - -
Vra11g0965 1110 Gene3D Ribonuclease Inhibitor 1007 1107 IPR032675 -
Vra11g0965 1110 SUPERFAMILY RNI-like 851 1098 - -
Vra11g0965 1110 Gene3D Ribonuclease Inhibitor 534 673 IPR032675 -
Vra11g0965 1110 Coils Coil 698 718 - -
Vra11g0965 1110 Gene3D Ribonuclease Inhibitor 868 1006 IPR032675 -
Vra11g0965 1110 Gene3D Ribonuclease Inhibitor 677 867 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0965 Vra-Chr11 8482286 8486356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0965 175 816 WRKY Transcription Factor Family AT5G45050 22.785 2.37e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0965 - - vra:106776709 1603.57