Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0963 ATGGCTAGATCTAAACGACGACGTTCGGGCATTGTTGCCAGCCATATCAGACCGAAAATGATTTTTCAGCCTATTCTGGAGGATGGAGTGTTTCGTTTTGATTGTTCTCTAAAGGATAGAGAAGCAGCATCTCCGAGTATTTCTTTTGTGAACGGCAAGGACAGAGACACACCTATCTCTACTGAGAAGGTTCCTCTGTATAACCCTACGTTTGAGATACGATTAGAGCAGCAGATTGTAAAACTTGAGCTGCCTGCAGGTTCCTCCCTTTATGGAACTGGAGAAGTTAGCGGACAGCTTGAGAGGACGGGCCAAAGAGTTTTCACATGGAACACTGATGCATGGGGTTATGGACCTGGAAATACATCCTTGTACCAATCACATCCGTGGGTGTTAGCTGTTCTTCCAAGTGGTGAGGGACTAGGAATCCTTGCTGACACTACAAGGCGCTGTGAGATTGATCTGAGGAAAGAATCAACAATACAGTTTGTTTCTCCATCTTCATATCCTGTCGTTACATTTGGTCCTTTTGCTTCACCCACTGAAGTGCTAAGTTCTCTATCGAAAGCAATTGGAACTGTATTTATGCCCCCGAAATGGTCTTTAGGCTATCATCAGTGCCATTCGAGTTATTTATCTGATCAGAGAGTTCTGGAGGTTGCAAAAACGTTCCAGAAGAAGTGCATACCATGTGACGTGATATGGATGGATACCGATTACATGGATGGTCTTCGTGTTTTCACATTTGACAAGAAGCGTTTCCAAGACCCCATGTCATTGGTGAAAGATCTCCGAAGTAGTGGTTGTAAAGTCATTTGGATGCTTGATCCTGGAATTAAGCTGGAAGAGGGTTATTTTGTATATGACAGTGGTTCTAAATATGATGTTTGGATCCAAAATGAAGATCAAACTCCTTTCATAGGGGAGGTGTGGCCTGGGCCTTGTGTCTTCCCCGACTATACTCAGTCAAAAGTTCGTGCATGGTGGGCAAATTTAGTCAAAGATTTCATTTCCAATGGTGTTGATGGTATTTGGAATGATATGAACGAACCAACTATTTTTAAGGTTGAAACAAATACAATGCCTGATAGCAATGTTCATAGAGGAGATAGTGAACTTGGTGGCTGTCAGAATCATTCTTTCTATCACAATGTGTATGGTCTTCTGATGGCAAGATCGACCTATGAAGGCATGAAACTAGCTAGTGAAGAGAAACGTCCTTTTGTTCTTACAAGAGCTGGATTTATTGGCAGCCAACGGTATGCAGCAACATGGACTGGTGATAATCTTTCGACCTGGGAGCATCTTCACATGAGTATCTCCATGGTACTTCAGCTGGGACTTAGTGGTCAGCCATTTTCAGGTGCTGATATTGGTGGATTTGCTGGAAATGCTACACCTAAACTTTTTGGAAGGTGGATGGGTGTTGGTTCCTTGTTTCCCTTTTGTCGAGGGCATTCTGAAGCTTGCACCACTGATCATGTACCTTGGGCTTTTGGGGAAGAGTGTGAAGAAGTTTGCCGATTGGCATTGAAGAGGCGATACCGCCTAATCCCACTTATCTACACTCTTTTTTATTTTGCTCATACACGGGGCACACCGGTGGCAACCCCTACTTTCTTTGCTGATCCAAAAGATCCTAGTCTGAGGAAGCTTGAAAATTCATTTTTGCTCGGTCCAGTCTTAGTGTATGCAAGCACCATACATGCACAGGGGTTGGATAAATTGGAGATTACTTTGCCTAAGGGGATATGGTTGCGTTTTGATTTCAACGATGCACATCCGGATTTGCCAGCCTTGTACTTAAAAGGTGGCTCTATCATTCCTGTGGGTCTCTCTCTTCAGCATGTTGAAGAAGCTAACCCTTCAGATGATTTGACTCTTCTCTTGGCTTTAGACGAAAATGGAAAAGCTGAAGGTGTTCTTTTTGAGGATGATGGTGATGGATACGGATTCACAGAAGGCAATTATTTATTAACACATTATGTGGCTAATCTTGAATCATCAGTTGTTACTGTGAGTGTACACAAAACCGAAGGATCTTGGGAAAGGCCTAAACGACGCCTGCATATTCAATTATTGCTGGGTGGGGGTGCAATGCTTGATACATGGGGAACTGATGGAGAAGTTCTGCAACTAATCTTGCCTTCTGAGGATGAGGTGTTGAAGCTAGTATCTACTAGTGAGAAGCAATACAAGGACCGCTTGGAAAGTGCAATTTCAATTCCTGATGTGGAAGAGGTTTCTGGACCCAAGAGAACAGAAAGGGCTTTCACTGAATGGAGAAGTGACATAGAAGACCATGTTAGTGGGAGGTCTATGGAGTTTTCGAATCTGAATGATGGAGGAATTATTCAGACCACTGATCCTAGTGACCCATTTAATACTAAGGAGGTTTTCCCTTCTCGAGATGCGATGCTGAATTGGGCCCGAGAAGTAGCAAAAGAGAATGGATTTGTTCTTACTATTTTGAGGTCAGAAACATGTACAAGAACTAATAAAAAGAATAACAGAGGGAAGACATATGTAATAATGGGTTGTGAAAGGAGTGGAAAATATAGACCATACAAGAATACATTATCTAAGGTGACTAGTACCAAAAAATGTGAGTGTCCCTTCAAACTAAGGGCAAAAGCTTTGAAAAAGAATGAAAGATGGGTTGTTAAAGTAATGTGTGGTCACCACAACCACGACTTAGGGGAAACATTAGTGGTAGGACATTCATATGCTGGCCGATTAAGTGCTGAAGAGAAGTCTTTAGTCATTGATATGACAAAAAACATGGTGGAGCCGAGAAACATACTACTAACTTTGAAAGATCATAATAATGAGACTACTATTAGGCATATTTATAATGCTCGACAAGCTTATCGATCTTCTCAGAAAGGTCCTAGGACAGAAATGCAAAACCTACAAAAGTTATTGGAATATGATCATTATGTATATTGGAATAGAAAGATGGATGGTTCTGATGCTATCAGTGATATATTTTGGGCACATCCAGATGCCATCAAACTTCTAAGCGCTTTCCATACTGTCTTGCTCCTTGATAATACTTATAAAGTCAATAGGTATAAATTGCCGCTACTTGAGATTGTTGGTGTTACTTCGACAGAGTTAACATTCTCTGTGGCATTTGCTTATCTAGAGTCTGAGCAAGTTGATAACTTCACTTGGGCACTGCAGAAGTTGAGAGGATTGATTGCCAAAGACAGTGAGATGCCTCCAGTAATTGTAACTGTAAGAGACAATGCTCTGATGAATGCAGTGCAGGCAGTCTTTCCGAGCTCTTCTAATTTGTTATGTCGTTTTCATATAATCAAGAATGTGAAGGCCAAATGCAAGGTGATGGTTCATCCAAAGGAGCAATATGACTTGGTGATGGATGCATGGCACAATGTTATGAATTCTCCTAACGAGGATGAGTATATGCAACGTTTGGCATTATTTGACAGAGTTTGCTCAGATTTTCCAAATTTTGGTGATTATGTGAAAAATACTTGGCTTACTCCTCACAAGGAAAAATTTGTCACAACATGGATAGATCGAGTGATGCATTTGGGTAACACAACACTCAACAGAGTGGAAACAGCACATTGGAGGTTGGAGAACTTGCTTGAAGATAGTGGGGCGGACATTTGTAGTTGTTGGGATGCTATGAACAACATGATTAAATTGCAACACAACGAGATTAAGGTGTCATTTGACAAAAGCATAAACACTGTGGAATACAATACGCCATTCTACAAATTGTTGGTGGGATTTGTATCAAGGAGTGCATTGAGTTATATATCTGACCAATATGACCGAATTAAGACCGTTGGCACTGATAGTTCTTTATGTGGTTGCACAATTAGAACTACACATGGTCTACCTTGTGCATGTGAACTTGCTAGTTACAATATACCCTTGCAGGTAGTTCAATATCATGGGACTAGGTTCAATTTCAGTTTCCAAGAAATGAATGAAGAGGGGTATGAAGTATCATTTCAACCAGTACCATTGCAGGCAATTCATATTCATTGGAGGAGGTTAAACTTCAGTTTCGAAGTAATAAACGAAGAGGGGTCTGAGGTATCATTGCAACGTGAAATTGATGCTTTGCACAAGCAATTTCAGGAACTTGATTATGCTGGAAAAGTTACCTTAAAGGCGAAATTGCGTGAACTAGCCTTGCCTGATTTAACTTTAATGTGTTCAGCTCCGGAAAAGATTAGAACAAATGATGCTTCACAGGATTTAGGATGGAAGAGAGATAAACCAGTTGAATGTGATCCTTTGTATTTGGAGCATATAGATTCACTACATTCTGCCCATGATAGCATGACTGCTCACCCTTCATCTGAGAAACCAGTCCATGACTCTAATAGCATGGAAGTTTTACCATCAATGAACCACATTCCGGTTGAAATTCATCCATTTAATGAAGGCAATGTAGATGTGAAAGCAGAAGAGAACTGTGGTTAG 4467 0.4099 MARSKRRRSGIVASHIRPKMIFQPILEDGVFRFDCSLKDREAASPSISFVNGKDRDTPISTEKVPLYNPTFEIRLEQQIVKLELPAGSSLYGTGEVSGQLERTGQRVFTWNTDAWGYGPGNTSLYQSHPWVLAVLPSGEGLGILADTTRRCEIDLRKESTIQFVSPSSYPVVTFGPFASPTEVLSSLSKAIGTVFMPPKWSLGYHQCHSSYLSDQRVLEVAKTFQKKCIPCDVIWMDTDYMDGLRVFTFDKKRFQDPMSLVKDLRSSGCKVIWMLDPGIKLEEGYFVYDSGSKYDVWIQNEDQTPFIGEVWPGPCVFPDYTQSKVRAWWANLVKDFISNGVDGIWNDMNEPTIFKVETNTMPDSNVHRGDSELGGCQNHSFYHNVYGLLMARSTYEGMKLASEEKRPFVLTRAGFIGSQRYAATWTGDNLSTWEHLHMSISMVLQLGLSGQPFSGADIGGFAGNATPKLFGRWMGVGSLFPFCRGHSEACTTDHVPWAFGEECEEVCRLALKRRYRLIPLIYTLFYFAHTRGTPVATPTFFADPKDPSLRKLENSFLLGPVLVYASTIHAQGLDKLEITLPKGIWLRFDFNDAHPDLPALYLKGGSIIPVGLSLQHVEEANPSDDLTLLLALDENGKAEGVLFEDDGDGYGFTEGNYLLTHYVANLESSVVTVSVHKTEGSWERPKRRLHIQLLLGGGAMLDTWGTDGEVLQLILPSEDEVLKLVSTSEKQYKDRLESAISIPDVEEVSGPKRTERAFTEWRSDIEDHVSGRSMEFSNLNDGGIIQTTDPSDPFNTKEVFPSRDAMLNWAREVAKENGFVLTILRSETCTRTNKKNNRGKTYVIMGCERSGKYRPYKNTLSKVTSTKKCECPFKLRAKALKKNERWVVKVMCGHHNHDLGETLVVGHSYAGRLSAEEKSLVIDMTKNMVEPRNILLTLKDHNNETTIRHIYNARQAYRSSQKGPRTEMQNLQKLLEYDHYVYWNRKMDGSDAISDIFWAHPDAIKLLSAFHTVLLLDNTYKVNRYKLPLLEIVGVTSTELTFSVAFAYLESEQVDNFTWALQKLRGLIAKDSEMPPVIVTVRDNALMNAVQAVFPSSSNLLCRFHIIKNVKAKCKVMVHPKEQYDLVMDAWHNVMNSPNEDEYMQRLALFDRVCSDFPNFGDYVKNTWLTPHKEKFVTTWIDRVMHLGNTTLNRVETAHWRLENLLEDSGADICSCWDAMNNMIKLQHNEIKVSFDKSINTVEYNTPFYKLLVGFVSRSALSYISDQYDRIKTVGTDSSLCGCTIRTTHGLPCACELASYNIPLQVVQYHGTRFNFSFQEMNEEGYEVSFQPVPLQAIHIHWRRLNFSFEVINEEGSEVSLQREIDALHKQFQELDYAGKVTLKAKLRELALPDLTLMCSAPEKIRTNDASQDLGWKRDKPVECDPLYLEHIDSLHSAHDSMTAHPSSEKPVHDSNSMEVLPSMNHIPVEIHPFNEGNVDVKAEENCG* 1489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0963 1488 CDD GH31_glucosidase_II_MalA 192 532 - -
Vra11g0963 1488 SUPERFAMILY Galactose mutarotase-like 71 160 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vra11g0963 1488 Pfam Transcription factor AFT 845 899 IPR014842 GO:0000981|GO:0036086
Vra11g0963 1488 Pfam Galactose mutarotase-like 89 154 IPR025887 -
Vra11g0963 1488 PANTHER ALPHA-GLUCOSIDASE 11 761 - -
Vra11g0963 1488 Gene3D glycosyl hydrolase (family 31) 41 175 - -
Vra11g0963 1488 Pfam Glycosyl hydrolases family 31 179 608 IPR000322 GO:0004553|GO:0005975
Vra11g0963 1488 Gene3D Glycosidases 195 516 - -
Vra11g0963 1488 ProSitePatterns Glycosyl hydrolases family 31 active site. 343 350 IPR030458 -
Vra11g0963 1488 PANTHER - 11 761 - -
Vra11g0963 1488 Gene3D - 605 732 IPR013780 -
Vra11g0963 1488 CDD GH31_N 70 192 - -
Vra11g0963 1488 Pfam Domain of unknown function (DUF5110) 626 694 IPR033403 -
Vra11g0963 1488 Pfam MULE transposase domain 1013 1109 IPR018289 -
Vra11g0963 1488 Gene3D - 517 600 IPR013780 -
Vra11g0963 1488 SUPERFAMILY (Trans)glycosidases 182 532 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0963 Vra-Chr11 8441216 8459247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0963 20 782 Glycoside Hydrolase AT3G23640 68.701 0.0 1135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra11g0963 Glyco_hydro_31 1.5e-126 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0963 - - vra:106777609 3063.86