Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0959 ATGTCTCTACTAAGCCGATTCTTCTACAAGCGTCCCCCTGATGGCTTACTCGAATTTGCAGACAGAGTCTATGTATTCGATTCCTGCTTCTCCACCGAAGCCCTCCCAGAGGGAATGTACCAGCTCTACCTCCGCCAAATTCTCTCCGACCTCCACGAAGACTTCCCGGAATCTTCCTTCCTCGCACTCAACTTCCGCGACGGTGACTCACGCAGCCGCTTCTCGCGCCTACTTTGCGAACTCGACGCAACCGTCATCGACTATCCGAAGCAGTACGAGGGCTGCCCCCTCCTTCCTCTCTCCCTCCTCCACCACTTCCTCCGCCTCTGTGACACCTGCCTCGCCGACCCCGCCGCCGTGATCTTGTTCCACTGTGAGCGCGGCGGCTGGCCCCTCCTCGCCTTTCTCCTTGCTGCTTTCCTCGTTTTCCGGAAGGCGCAGAGTGGGGAGCGGAAGATTCTGGAGATGGTTCACAGGGAGGCGCCGAAGGGGCTGCTGCAGCTGCTGTCGGCGCTCAACCCGATGCCGTCGCAGCTGCGTTATGTGCAGTATGTGGCTCGGAGGAACATTGGTGCGGAGTGGCCGCCGCCGGAGAGGGCGCTGTCTCTGGACTGTGTGATACTCAGAGGGGTTCCTGGTTTTGATGGGGGGAATGGGTGCAGGCCGTTGTTTAGGATTTTTGGGAGGAATTTGCTTAGTAAAGGCGGGCTTTCCACGCGGATGATTTATAATATGCATAAGAAGAAGAAGACTTTGAGGCACTACAGACAGGCAGACTGTGATGTGATTAAGATTGATATTCAATGCTTAGTGCAAGGGGATGTGGTGTTGGAGTGTGTGCATTTGGATTTGGATCCGGAGAGGGAGGTGATGATGTTTCGAGTGATGTTCAATACAGCATTCATTCGGTCAAACATTTTGATGCTGAATGCTGAGAACTTGGACATTCTGTGGGATTCGAAGGAGCGGTATCCAAAGGGCTTCCGGGCTGAGGTATTGTTTGGGGAGGTTGAAAACATAAGTCCTCAAAGGGCTCCTACAAGTATTTTAGATGGTGAGGTGAAAGGTGGATTACCCATTGAGGCATTTTCAAGGGTTCAAGAACTTTTCAGTGGTGCAGAATGGATTGACAGTGGTGATTCTGCTGCTGTATGGCTTCTTAAGCAGCTTACAGTCTTAAACGACGCCAAAGAGTTTTCAAGGTTTCAGGGTAGAGGAAGTTGGTATTCATCTCCTGCTGACTCTGAAGAAGAAAATAATGAGTCCAGCACTGCTGATAGTTCAGACGAGGCCTTTGATGTTATTCCCAGGTCTTATGCTGATCCTTCAAAATTATTTACATCTGACACACCTGATTTGGTCCATTTAACTTTTGAAAACAACGGTGGAGATTATGTAAATCTAACTTCAGGAACACCTGATCAGTCACTAACAGATGATGTTTCATTGCCTCACCATGCTCTAACTAAGGAATCTTCTCCTTGTTTGTCTCCACCTTCACCTTCACATTTTCCCGCTATTCAACCTCTACCGACACTTCCACCTCAATCATCAATACCTATACAGCCAAGTTTAGCTCCTCCCCATCCTCCCCCACCTGCGCATCAATTAGTTCAGGATCTGGACAATGCTTCTGCATTGCCTTCACCTCCTCTTCCACCCCCTCTCCCTCCTATAGGTGGGGATGCCGATAGCACTCCTGGTTTACCTCCATCTCATCTAGGATCTGTACAAACAAGTTCAGCCCCTCCACCACCTCCTCCTCCCCCACTTGCACTTGGACCTGTACAAACAACTTTAGTCCCACCACCTCCTCCACCACCACCACCCCCAGGTACTGTGAGAACAAATTCAGTCCCACCACCTCCGCCTCCACCTCCAGGTCCTTTGCGAACAGATTTGGCCCCTTCACCTCCACCACCATCTCCTCCTCCTCCTCTTTTAAATCCTATGCGAACAGGTTCAGCCCCACCACCACCTCCACCTCCACCTTCTTTAGGATATGTACAAACAGGTTCAGCTCCACCACCACCACCACCACCTCCAGGTCCTACACAAACAAGTTCAGTTCCACCTCCACCTCCACCTCCACCTCCTTCAGGTACTACACAATTAGGTTCTTTACCCCCACCATCTCCAGGTATTGTACAAACAGGTTCTATTCCACCATCACCTCCACCTCCTCGAGGTCCTGGACGAACTGGTTCAGCTACACCTCCACCTCCACCTCCTCCTCCTCCTCCAGGTCATGCACTACAAACAAGTTCAGCTCCACCTCCACCTCCACCTCCACCTCCTCCAGGTCCTGTACGAACAGGTTCAGCTCCACCACCACCTCCACCTCCTCCAGGTGCTGTACAAAGAGGTTCAGCCCCACCACCTCCTCCTCCTCCTCCTCCTCCAGGTCCTGTACAAACAAGTTCAGCCCCACCACCTCCTCCTCCTCCTCCTCCAGGTCCAATACGAACAGGTTCAACTCCACCACCACCACCTCCTCCTCCAGGTCCTGCACGAACAGGTGTAGGTCCACCAGCACCTCCACCTCCTCCAGGTCCTGTACGAACAGGTTCAGCCCCTCCACCACCTCCTCCTCCAGGTCCTATACGCACAGGTTCAGCTCCACCACCACCTCCTCCACCAAGTGTACAAACAGGTTCAGCTCCACCACCACCACCACCATTGGCACCAAGGCCCCCAGGTGCTCCTCCTCCTCCTCCACCTGGTCGTGGTGCATCTCCAATGCCACCTGCAGTTACAGCCACTAGTGTGGCACCACCTCCTGGCAAAGCCTCAACAACAAATGTTGGTAGAGGTCGTGGTACTGGTGTTACTGCTAATGCTCCGAAGAAAACTTTGCTAAAACCCCTACACTGGGTGAAAGTCGCTCGAGCAGCCAAGGGAAGTCTATGGGCTGATTCACAGAAACAGGATAGTGGAACAAGGGCCCCTGAGATAGATATATCAGAACTTGAGACCCTGTTTTCAGCAGCATCTACTTCTGATGGGAGCAGTACTAGAGGTGGAGTTCGGCGTGGTCCTAATATTAACAAGCCAGAGAAAGTACAACTGGTTGACTTGCGAAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTAAAGCTGTACTGGCATTGGATTCTTTGGTTCTTGATATTGATCAGGTTGAGAATCTCATCAAGTTCTGTCCAACAAAGGAAGAGATGGAAATGTTAAAGAATTATGCAGGAAACAAGGAAATGCTTGGAAAGTGTGAACAGTTTTTTATGGAGCTGATGAAGGTTCCGCGTGTGGAATCCAAATTAAGGGTTTTTGCTTTTAAAATCACCTTTTCTTCTCAGGTGAACGATTTGAAGGTAAATTTGAACACAATCAACAATGCAGCCAGAGAGGTGAAAGAATCTGGGAAACTGCGTCAAATAATGCAGACTATTCTTACTCTGGGAAATGCCTTGAATCAAGGAACAGCACGGGGATCAGCTGTTGGATTCAAATTGGATAGCCTTCTTAAATTATCTGACACTCGTGCAAGAAATAATAAAATGACTTTAATGCATTATTTGTGTAAGCTTCTTGCTGAGAAAATGCCAGAACTGCTAGATTTTGATAAGGATCTTGTCCATTTGGAAGCAGCTTCTAAGATTCAACTAAAAGCATTGGCCGAGGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTCGCTGCTTCTGAAAATGATGGTGCCATATCAACAGGATTTCGTAAGGTGTTGAAGAATTTTCTTGATATTGCTGAAGCTGATGTGAGGTCCCTTATATCATTGTATTCTGAAGTGGGAAGAAGTGCAGACTCTTTGTCCCAATACTTTGGAGAGGATCCAGCTAGATGCCCCTTTGAACAAGTGACACAAATCCTTGTTGTCTTTGTCAAGATGTTCAACAAGTCAAGGGAGGAGAATGAAAGGCAAGCAGATGCTGAAAAGAAGAAATTAGAGAAAGAAGCCTTGAAGGAAAAAGCCGCAAATAATTCACATTCTAAAAGAGACGTGATTCGGTAG 4071 0.4898 MSLLSRFFYKRPPDGLLEFADRVYVFDSCFSTEALPEGMYQLYLRQILSDLHEDFPESSFLALNFRDGDSRSRFSRLLCELDATVIDYPKQYEGCPLLPLSLLHHFLRLCDTCLADPAAVILFHCERGGWPLLAFLLAAFLVFRKAQSGERKILEMVHREAPKGLLQLLSALNPMPSQLRYVQYVARRNIGAEWPPPERALSLDCVILRGVPGFDGGNGCRPLFRIFGRNLLSKGGLSTRMIYNMHKKKKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNAENLDILWDSKERYPKGFRAEVLFGEVENISPQRAPTSILDGEVKGGLPIEAFSRVQELFSGAEWIDSGDSAAVWLLKQLTVLNDAKEFSRFQGRGSWYSSPADSEEENNESSTADSSDEAFDVIPRSYADPSKLFTSDTPDLVHLTFENNGGDYVNLTSGTPDQSLTDDVSLPHHALTKESSPCLSPPSPSHFPAIQPLPTLPPQSSIPIQPSLAPPHPPPPAHQLVQDLDNASALPSPPLPPPLPPIGGDADSTPGLPPSHLGSVQTSSAPPPPPPPPLALGPVQTTLVPPPPPPPPPPGTVRTNSVPPPPPPPPGPLRTDLAPSPPPPSPPPPLLNPMRTGSAPPPPPPPPSLGYVQTGSAPPPPPPPPGPTQTSSVPPPPPPPPPSGTTQLGSLPPPSPGIVQTGSIPPSPPPPRGPGRTGSATPPPPPPPPPPGHALQTSSAPPPPPPPPPPGPVRTGSAPPPPPPPPGAVQRGSAPPPPPPPPPPGPVQTSSAPPPPPPPPPGPIRTGSTPPPPPPPPGPARTGVGPPAPPPPPGPVRTGSAPPPPPPPGPIRTGSAPPPPPPPSVQTGSAPPPPPPLAPRPPGAPPPPPPGRGASPMPPAVTATSVAPPPGKASTTNVGRGRGTGVTANAPKKTLLKPLHWVKVARAAKGSLWADSQKQDSGTRAPEIDISELETLFSAASTSDGSSTRGGVRRGPNINKPEKVQLVDLRRAYNCEIMLSKIKIPLPDMLKAVLALDSLVLDIDQVENLIKFCPTKEEMEMLKNYAGNKEMLGKCEQFFMELMKVPRVESKLRVFAFKITFSSQVNDLKVNLNTINNAAREVKESGKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELAASENDGAISTGFRKVLKNFLDIAEADVRSLISLYSEVGRSADSLSQYFGEDPARCPFEQVTQILVVFVKMFNKSREENERQADAEKKKLEKEALKEKAANNSHSKRDVIR* 1357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0959 1356 MobiDBLite consensus disorder prediction 715 913 - -
Vra11g0959 1356 MobiDBLite consensus disorder prediction 407 431 - -
Vra11g0959 1356 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1018 1346 - -
Vra11g0959 1356 Gene3D - 195 340 - -
Vra11g0959 1356 PANTHER FORMIN-J 859 1350 - -
Vra11g0959 1356 PANTHER FORMIN-J 1 711 - -
Vra11g0959 1356 SMART PTEN_C2_2 196 1055 IPR014020 -
Vra11g0959 1356 MobiDBLite consensus disorder prediction 488 949 - -
Vra11g0959 1356 Pfam C2 domain of PTEN tumour-suppressor protein 197 335 IPR014020 -
Vra11g0959 1356 MobiDBLite consensus disorder prediction 1322 1356 - -
Vra11g0959 1356 MobiDBLite consensus disorder prediction 580 706 - -
Vra11g0959 1356 MobiDBLite consensus disorder prediction 996 1010 - -
Vra11g0959 1356 Gene3D Protein tyrosine phosphatase superfamily 15 189 IPR029021 -
Vra11g0959 1356 MobiDBLite consensus disorder prediction 547 561 - -
Vra11g0959 1356 MobiDBLite consensus disorder prediction 996 1016 - -
Vra11g0959 1356 Pfam Formin Homology 2 Domain 948 1318 IPR015425 -
Vra11g0959 1356 Coils Coil 1122 1142 - -
Vra11g0959 1356 Coils Coil 1224 1251 - -
Vra11g0959 1356 ProSiteProfiles C2 tensin-type domain profile. 198 337 IPR014020 -
Vra11g0959 1356 Gene3D Formin, FH2 domain 943 1329 IPR042201 -
Vra11g0959 1356 MobiDBLite consensus disorder prediction 925 940 - -
Vra11g0959 1356 MobiDBLite consensus disorder prediction 498 535 - -
Vra11g0959 1356 ProSiteProfiles Formin homology-2 (FH2) domain profile. 943 1343 IPR015425 -
Vra11g0959 1356 SMART it6_source 620 1356 IPR015425 -
Vra11g0959 1356 Coils Coil 1318 1345 - -
Vra11g0959 1356 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 337 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0959 Vra-Chr11 8383719 8394478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0959 1 469 FH2 protein (formin) Gene Family AT1G31810 69.639 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0959 - - var:108334847 1157.9