Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0958 ATGGGTTACGATTCGGCTAGCCCCTCGCAGGATGGGAGGGACGAAGATGATGAAGAAGAATATGAGGAGTCTGGCAAGGGTAATCGGTTTCTTGGGTTCATGTTTGGAAATGTAGATAATTCTGGTGATCTCGATGTTGACTATCTTGATGAGGATGCAAAGGAGCATCTTTCTGCATTAGCCGATAAGTTGGGTCCATCACTGACAGATATAGATTTGTCAGGAAAATCGCCACAAACACCACCTGACGTTGTTGAACAAGACTGTGATGAAAAAGCTGAAGACGCTGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGACAGAGGCTGCCAATGAAGAAGACTATTTATTGCCAAAAAAAGAATTTTTCTCTGCTGAAGCATCTGTATGTATGGAATCCAAAGCTTCTGTATTTGATGATGAAAATTATGATGAAGAATCTGAGAAGGAGCAAGACTTTCTGAATGAAGATTCTAAACCTGATAATATCTCCTTACCTGAGGAGCAGGAAGAGACTTTGGTAGAGGCATCTAAAGAAGAGAGTGCTCTTGAACGTGAATTACATGTTGACTCACTGCAAAGTGAAGAATTGGATGCTGATGTACAAAAACCTGAGGAGGAAGGGACTGAAGTCCAGAAAAGGTCTATGGCTATGCCGTTGCCTATTTTATGTGTGGAAGATGGTGTGGCAATTTTACGCTTCTCTGAAATCTTTGGCATTCATGAACCTCTCAGAAAGGGAGAAAAGAGAGAACACAGGCAACCTATTACTAGAGATAGATACAAGTCTTTGGATTTTACTGATGATTTTGTAGAAGAGGATGAAGAGGAATTCCTCAAGGGTTCCTCCCAGAGTCTCTCACAGACTAAACAGGTTTCTGTAGTTCATAATGATGTATCAGAAAGCAACGATGTTGACTTGGAGTTTCCAAAATTTGGGTTTCTTCATACTGAGCCCTCAGTGGCCAGGAAAGATGATCATCAATCGAAGGACTCGTGTCATAGTGCTGAACCAATGAAAGGGGATTTTGAAGAAGACCTTTCCTGGAAAGATCATCCTTTCATATGGACCAACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATGAAATCATTTGGGGCAATTCTCCTGTTCCAAGTAATAATAATATTGAAAGCTGTGAAGTTTCTGGACCTGAGTTGGGAGTTTCTGGTGGCAGTGAAATAGAAATTGAAAGTGGGATCCAGAATATTCAGCTGGAGCATCACAAGATACTGGAAGATAAAGATCATAATGTCTTGCTCAGCTCTCCTGTCTCGTTGGAGGCCTTTGGCTCAAGGGATTCTTCTGAAGCTAAAACCAATCTAATATCTAGAAGTCTTTTTCATCCCCAACTTTTAAGGTTAGAATCCAGATCTGAAGTGGATAGTTCTAGTCTTCCAGATGGAAAAGAGGGGGAGATATCTAAACATAATCAAAGTGGTCAAATTACACGTTTTAGCAAGGCTATATCACAAAATAGAGACATGGTGGAGGGTTCCTGGTTAGACGAGATAATATGGGAGGAGCTTGATCAGCCTATGGTGAAACCAAAGCTTATCTTTGATCTTCAGGATGATCAAATGCACTTCGAAGTTTTGGATAGTAAGGATGGTGCACATCTTCGTCTTCATGCTGGGGCTATAATTTTAACTCGTTCTTCAAAATCAAGCAGTGGGGACTCATCTGAAGTACCAGGACATGGAAGTCAATATGGATGGCGATATGTGTCTAATGACAAACATTATTCAAATCGTAAAACTTCTCAACAATTGAAATCAAATTCCAAAAAACGCTCGGCACATGGTGTCAAAGTTTTCCACTCTCAACCTGCGTTGAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCAAAAGCATTATGGTATCCCCATGACAATGAGGTTGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACCCATGAAAATTATTATAAAGAGTTTGGGTGGCAAGGGAAGTAAATTGCATGTGGATACTGAAGAAACTCTCTCAACTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTTAAGGCATCAGAAACAGTGAAAATATTTTATTTAGGGAGGGAGCTTGAAGATCAGAAGTCACTTGCCGAACAAAATGTTCAACCAAACTCCTTGTTACATCTTGTTCGTTCAAAGATACATTTGTGGCCAAAAGCACAGAGGGTTCCTGGGGAGAACAAGTCCTTGCGTCCTCCTGGGGCATTCAAGAAAAAATCTGATCTGTCTGTAAAAGACGGACATGTTTTTCTGATGGAGTATTGTGAAGAAAGACCTTTACTTTTGAGCAATGTTGGAATGGGTGCAAGACTTTGTACATACTATCAAAAATGCTCACCAGATGACCAATCTGGCTCTTTATTACGTAACACAGATAGTAGCTTGGGGCACGTTATTTCTCTGGATCCTGCGGATAAATCTCCGTTCCTTGGAGATTTGAAACCTGGTTGCTCTCAGTCATCACTAGAGACAAATATGTATAGAGCACCCGTATTTCCTCATAAAGTTCCACTAACTGACTACCTGCTGGTTCGCTCACCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAATTAATGTTGTTGGACAGCAGGAGCCACTCATGGAGGTATTTTCACCAGGAAGTAAAAATCTTCAGACTTACATGATGAACAGGCTGTTGGTACACATGTGCCGTGAATTCCAAGCAGCAGAGAAGCGGCACTTGCCTCCTCATATCCGTGTTGATGAATTTCTCTCACAGTTTCCTTACCAATCGGAAGCATCATTTCGTAAGAAAATCAAGGAATATGCAAATTTACAGAGGGGAGCAAATGGACAGTCGATTTTGGTTAAAAAGAGAAATTTCCGCATGTGGTCTGAGGATGAATTGAGAAAAATGGTTCTGCCGGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCAGGCCTCTACCGGCTAAAACATTTAGGAATAACTGAAACACACCCTACAAATATTTCATCTGCAATGAGTCGGCTCCCTGATGAAGCAATAGCATTGGCTGCTGCATCACACATTGAGAGAGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGGGTAAGGAAAATATTGAGCGAATGGAAATTACTGGCGTTGGTGATCCTTCTGGTCGAGGCATGGGTTTCAGCTATGCTCGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAATGGTGAAGAAGAAAGCAGCTGCTAACCGTGGAGGTTCCACTGTTACTGGTACAGATGCTGATCTGCGTAGATTAAGCATGGAGGCTGCGCGAGAGGTTCTTCTTAAGTTCAATGTTCCTGAGGAAGTCATTACTAAACAAACCAGGTGGCATCGCATTGCTATGATACGTAAACTTTCAAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGACCCGACAACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACTAGAGAAAAATGCCAGGAGATTTGGGATCGACAAGTTCAGAGTCTGTCAGCTGTAAATGCTGATGAGAACGAGAGTGATTCGGAAGGTAATAGTGATCTGGATTCTTTTGCTGGAGACCTGGAAAATTTACTTGATGCTGAGGAGTTTGAAGAGGGAGAAGAAGGTACAAATGACTTAAAACGTGACAAGGGAGACGGTGTTAAGGGTCTTAAAATGAGAAGACGCTCAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCCGCTGAGGCTGCTGAGTTATGCAGGTTGCTGATGGATGATGATGAAGCTGATAGGAAGAAAAAGAAGAAAACTAAAGTAACTGGGGAAGAAACAAGATTGGTATCAAAGATGCAATCAAAATTTGCCTTCGACAATGCTGAACAAGTTAAACAAATAACAAATAGTTTACAATTAGATGGAAATATTCCCTTGAAAGAGGACACGATTACAGATCTTAGGGAGGAGGAAAATTTTGGTGCTAAAAAAAGCAAATCACTGAAGGTCAATAAAGCCAAGAAGAATGATATTGCACCTATTTCTCTTCCCAATAAAAAAATCAAATTGAATATGGGAGAAGGAATTAAGAACCAGGTGTTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGTCAGCCTGGGCATATGCGAACAAACAAGAACTGTCCAAAATATGGTGAAGATCTTGAAACTCAACTTGAATCTGCAGATATGGAAAAATCATCTGGGAAACCCATATCTGTGGACCCCTCCAGTCACTCCCAGCCTAAAACCGCCTCCAAAAAGTCAAGTTCGAAAAGCAACTCAAAGATTACTCCTGTTGACAATTCGGCAAAAATTCCACTGAAATTCAAATGTGGCTCCACAGAGAAATCTTCTGATAAACCTGTAACAGAGACCCTGCAGAACTCTGACAAGCCAGTCACTTCGGATTCAGAAACTGCAAAGTCTGCTAAGGTTAATAAGATAATTATTCCCAAAAAAGTGAAACCAGATGATACACAGGCTGAATCTCGTAAGCATGCTGTTGTTATAAGGCCTCCTACTGAATCAAGTAGAGGGCTTCCTGCTGATTCAGGTAGAGGGCCTCCTACTGATGCAGGCAGAGGTCAGGTTGATTATCAGAAGTTACCAATTAAAATACGACCACCAACAGAGGAGCAAAGTCACAAAAAGATTGTTATAAGACGTACGAAGGAGGTTATTGATTTAGAACTGGATAGTCCTGGTGGAAACACTGGACTTCAACACAGAAAGACAAAAAGAATTGTTGAATTGTCAAATTTTGAGAAACATAAACAGGAGACCGTGTATGGAACTGGAGCTTTTCCAAAATGGAACACTAAAGAGGACAGAAGATGGTGGGAAGAGCAAGAGAAACGAAGAAATGATGCAAGACTTAGAGAAGAAGACAGAGCAAGGAGGCATCACAAAGAAGAAATGAGGATGCTCAAAGAGCAAGAAAGGTTAGATGAGATAAAAAGATTTGAAGAAGATATCAGAAGAGAGAGGGAGGAAGAAGAACGGCAAAAGGCTAAGAAGAAAAAGAAGAAGAAAAAGCCTGATTTAAGAGATGAGTATTTAGATGATCCCAGAGCAAGAAGACATGATAAGAGAATGCCTGAAAGAGACAGGAGTGGAAAAAGGAGATCTGTTGCTGAGTTAGGAAAGCTTAGTGCAGATTATATGCCGCCAACAAAACGCCGAAGAGGGGGAGGGGGAGAGGTTGGTTTGGCAAATATCTTGGAGGGCATTGTGGAAACGATGGTTAAAGATAGGTACGAGCTATCGTATCTTTTCGTGAAACCAGTGTCGAAGAAAGAGGCTCCTGACTACCTGGACATTATAGATACGCCTATGGATCTTTCCAGAATCAGGGAGAGAGTACGGAATATGGAGTACAAGAGCCGAGAAGATTTCAGGCATGATGTTTGGCAGATTACTTTTAATGCACACAAATACAACGACGGGAGAAATCCTGGAATTCCTCCCCTTGCAGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGATGATAGCCTCACTTCAGCAGAAGCTGGCATTGAAACTAGAGATTCCTAA 5706 0.4134 MGYDSASPSQDGRDEDDEEEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPDVVEQDCDEKAEDAVDYEDIDEEYDGPETEAANEEDYLLPKKEFFSAEASVCMESKASVFDDENYDEESEKEQDFLNEDSKPDNISLPEEQEETLVEASKEESALERELHVDSLQSEELDADVQKPEEEGTEVQKRSMAMPLPILCVEDGVAILRFSEIFGIHEPLRKGEKREHRQPITRDRYKSLDFTDDFVEEDEEEFLKGSSQSLSQTKQVSVVHNDVSESNDVDLEFPKFGFLHTEPSVARKDDHQSKDSCHSAEPMKGDFEEDLSWKDHPFIWTNFYPLDQQDWEDEIIWGNSPVPSNNNIESCEVSGPELGVSGGSEIEIESGIQNIQLEHHKILEDKDHNVLLSSPVSLEAFGSRDSSEAKTNLISRSLFHPQLLRLESRSEVDSSSLPDGKEGEISKHNQSGQITRFSKAISQNRDMVEGSWLDEIIWEELDQPMVKPKLIFDLQDDQMHFEVLDSKDGAHLRLHAGAIILTRSSKSSSGDSSEVPGHGSQYGWRYVSNDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIIKSLGGKGSKLHVDTEETLSTVKAKASKKLDFKASETVKIFYLGRELEDQKSLAEQNVQPNSLLHLVRSKIHLWPKAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDSSLGHVISLDPADKSPFLGDLKPGCSQSSLETNMYRAPVFPHKVPLTDYLLVRSPKGKLSLRRIDKINVVGQQEPLMEVFSPGSKNLQTYMMNRLLVHMCREFQAAEKRHLPPHIRVDEFLSQFPYQSEASFRKKIKEYANLQRGANGQSILVKKRNFRMWSEDELRKMVLPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVITKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNADENESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKRDKGDGVKGLKMRRRSTLAQAEEEIEDEAAEAAELCRLLMDDDEADRKKKKKTKVTGEETRLVSKMQSKFAFDNAEQVKQITNSLQLDGNIPLKEDTITDLREEENFGAKKSKSLKVNKAKKNDIAPISLPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQPGHMRTNKNCPKYGEDLETQLESADMEKSSGKPISVDPSSHSQPKTASKKSSSKSNSKITPVDNSAKIPLKFKCGSTEKSSDKPVTETLQNSDKPVTSDSETAKSAKVNKIIIPKKVKPDDTQAESRKHAVVIRPPTESSRGLPADSGRGPPTDAGRGQVDYQKLPIKIRPPTEEQSHKKIVIRRTKEVIDLELDSPGGNTGLQHRKTKRIVELSNFEKHKQETVYGTGAFPKWNTKEDRRWWEEQEKRRNDARLREEDRARRHHKEEMRMLKEQERLDEIKRFEEDIRREREEEERQKAKKKKKKKKPDLRDEYLDDPRARRHDKRMPERDRSGKRRSVAELGKLSADYMPPTKRRRGGGGEVGLANILEGIVETMVKDRYELSYLFVKPVSKKEAPDYLDIIDTPMDLSRIRERVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSLTSAEAGIETRDS* 1902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0958 1901 Coils Coil 1263 1290 - -
Vra11g0958 1901 MobiDBLite consensus disorder prediction 156 216 - -
Vra11g0958 1901 MobiDBLite consensus disorder prediction 1450 1480 - -
Vra11g0958 1901 ProSitePatterns Bromodomain signature. 1802 1859 IPR018359 -
Vra11g0958 1901 MobiDBLite consensus disorder prediction 470 491 - -
Vra11g0958 1901 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Vra11g0958 1901 PRINTS Bromodomain signature 1800 1813 IPR001487 GO:0005515
Vra11g0958 1901 PRINTS Bromodomain signature 1814 1830 IPR001487 GO:0005515
Vra11g0958 1901 PRINTS Bromodomain signature 1830 1848 IPR001487 GO:0005515
Vra11g0958 1901 PRINTS Bromodomain signature 1848 1867 IPR001487 GO:0005515
Vra11g0958 1901 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1395 1896 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Vra11g0958 1901 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 15 1299 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Vra11g0958 1901 Gene3D - 650 740 - -
Vra11g0958 1901 MobiDBLite consensus disorder prediction 1246 1260 - -
Vra11g0958 1901 Coils Coil 1672 1725 - -
Vra11g0958 1901 MobiDBLite consensus disorder prediction 66 91 - -
Vra11g0958 1901 MobiDBLite consensus disorder prediction 1241 1260 - -
Vra11g0958 1901 ProSiteProfiles Ubiquitin domain profile. 668 738 IPR000626 GO:0005515
Vra11g0958 1901 MobiDBLite consensus disorder prediction 1413 1599 - -
Vra11g0958 1901 MobiDBLite consensus disorder prediction 472 486 - -
Vra11g0958 1901 Pfam Protein of unknown function (DUF3591) 587 1154 IPR022591 -
Vra11g0958 1901 PANTHER BNAA01G26290D PROTEIN 15 1299 - -
Vra11g0958 1901 PANTHER BNAA01G26290D PROTEIN 1395 1896 - -
Vra11g0958 1901 MobiDBLite consensus disorder prediction 1496 1522 - -
Vra11g0958 1901 Gene3D - 22 68 IPR036741 -
Vra11g0958 1901 MobiDBLite consensus disorder prediction 1726 1760 - -
Vra11g0958 1901 Gene3D - 1772 1901 IPR036427 GO:0005515
Vra11g0958 1901 CDD Bromodomain 1786 1882 - -
Vra11g0958 1901 Pfam TATA box-binding protein binding 18 61 IPR009067 -
Vra11g0958 1901 CDD Ubl_TAFs_like 668 739 - -
Vra11g0958 1901 Pfam Ubiquitin family 670 741 IPR000626 GO:0005515
Vra11g0958 1901 Pfam Bromodomain 1788 1863 IPR001487 GO:0005515
Vra11g0958 1901 MobiDBLite consensus disorder prediction 1530 1551 - -
Vra11g0958 1901 MobiDBLite consensus disorder prediction 1662 1717 - -
Vra11g0958 1901 ProSiteProfiles Bromodomain profile. 1797 1867 IPR001487 GO:0005515
Vra11g0958 1901 SUPERFAMILY Bromodomain 1767 1889 IPR036427 GO:0005515
Vra11g0958 1901 MobiDBLite consensus disorder prediction 1662 1761 - -
Vra11g0958 1901 MobiDBLite consensus disorder prediction 594 613 - -
Vra11g0958 1901 SUPERFAMILY Ubiquitin-like 638 738 IPR029071 -
Vra11g0958 1901 MobiDBLite consensus disorder prediction 140 217 - -
Vra11g0958 1901 SMART bromo_6 1776 1887 IPR001487 GO:0005515
Vra11g0958 1901 MobiDBLite consensus disorder prediction 1 29 - -
Vra11g0958 1901 SMART ubq_7 668 740 IPR000626 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0958 668 738 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.028 3.49e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0958 K03125 - gmx:100780733 3186.36