Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0954 ATGGACGACGACCATGGCCATCGCTTTCTTAACAACTTCGTGATTCTTCTCCTTGCAATGGGTTTATCAGCTTTCTTCGTATCATTGTGCCATTTCATAGCCATTTGCTTCTGGTACCAACGCATCACACACCAAAACCCACCGCCGACAGCGACGGCCTCCTCGGCGGTGCAGATGATTCCTACACACACGTACCACAGGAAGACAGTTGATGGCGGTGTGGTTCCCGGCGACGGCGATGAATGTGGGACGTGTGTGGTGTGCTTGGGTGAGTTTGAGGAGGGTGAGGAGCTGAGGACGTTACCTGATTGCATGCACTGTTTCCACGTGGCATGTATTGACACGTGGCTGTGTTCGCATTCGAGTTGTCCCGTTTGCCGGAGCATTGCCGCACCGACTTTGGAGCATGATTTGAACGATGCGAATGAGCACCGCATACATATGACGCAGTTTTCCATTGTACAAAATGGCTTTGTGTTACTAGGGTGA 489 0.5153 MDDDHGHRFLNNFVILLLAMGLSAFFVSLCHFIAICFWYQRITHQNPPPTATASSAVQMIPTHTYHRKTVDGGVVPGDGDECGTCVVCLGEFEEGEELRTLPDCMHCFHVACIDTWLCSHSSCPVCRSIAAPTLEHDLNDANEHRIHMTQFSIVQNGFVLLG* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0954 162 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 156 - -
Vra11g0954 162 Pfam Ring finger domain 84 127 IPR001841 -
Vra11g0954 162 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 156 IPR044675 -
Vra11g0954 162 SUPERFAMILY RING/U-box 84 132 - -
Vra11g0954 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 132 IPR013083 -
Vra11g0954 162 ProSiteProfiles Zinc finger RING-type profile. 85 127 IPR001841 -
Vra11g0954 162 SMART ring_2 85 126 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0954 Vra-Chr11 8327847 8328415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0954 11 129 C3H Transcription Factor Family AT1G76410 40.157 3.32e-23 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0954 - - var:108336104 304.293