Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0946 ATGGGGTCTACTGAGCATGGGAGAGTATCCGTTAGGGAGTTCCAGGCCAATGGAAGCCGCATGGCTGCATCAGAAGTTGAGGCCAAGCTTGATCAAGGAAATATTCAAGAAGCAGAAGATTCGTTGCGAGAAGGATTGTCACTCAATTTTGAGGAAGCGAGAGCTCTTCTTGGTAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGAGATTGCAATCTTCCTTTCCTGAAAAACCACCTGGCAAGAAAGGTCATGCACATACTGAATCAGCCTCGGGCTCTCAGCATGCGGCTAGCTTGGTGCTTGAAGCCATTTACTTAAAAGCCAAGTCTCTGCAAAAATTGGGGAAATTTACAGAGGCTGCTAATAATTGTAAACGTATTCTTGATTCCGTTGAGAAGATATTTTATCAGGGTATTCCTAATATTCAAGTGGATAATAAATTGCAAGAGATAGTCAGCCATGCTGTAGAGCTCCTTCCAGAACTTTGGAAGCAAGCTGGTTGCTATGATGAGGCAATCTCTGCTTATAGACGAGCCCTTCTTAGTCAATGGAACCTTGATAATGATTACTGTGGAAGAATTCAGAAGTCATTTGTTATGTTTTTGCTATACAGTGGGGTGGAGGCAAGTCCACCCAGTTTAGCAGTTCAGATTGAAGGGTCATATGTGCCTAAAAGTAATCTCGAAGAGGCTATTCTGCTATTGATGGTTCTTTTGAGAAAGTTTAGCCTCGGTAAGATGAAATGGGATCCATCAGTCATGGAACACCTTACTTTTGCACTTTCTATATGTAGCCAAACTTCTATTTTAGCAAAGCAAATTGAAGAGTTGATGCCTGGAGTATACCATCGAATCGATTGTTGGAATTCTTTAGCTTTTTGTTATAGTAGTGCTGGACAAAATGACTGTGCTTTGAGCCTGCTAAGGAAATCTTTGCACAAACATGAACGACCAAATGACCTTACATCCTTATTGTTAGCAGCTCGGATCTGCAGCTCAGATCCCCATCTTGCTGCTGAGGGAGTGATCTATGCACAGAGGGCAGTCAATAATGCTCGTGACCAAAATGAGCATTTGAAAGGTGTTGCTTTACGGATGTTGGGACTTTGTCTTGGAAAGCAATCTAAGGTTGCTTCCTCTGACTCTGAGAGGTCTTGCCTTCACTCCAAAGCTTTAGAGTCATTGGTGGCAGCAATCAAATTAGAGCCAAACAATTCTGATCTGATTTTTGAATTGGCTGTTCATTATGCACAACACCGAAACTTGTCTGCTGCTTTGCGCTCTGCAAGAAATTTCTTTAATCAAACAGGTGGTTCTATGCTGAAATCTTGGAGATTGCTTGCTCTAATTTTGTCTGCACAACAAAGATTTTCTGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGCAAGATGGGAGCAGGGGCCACTGCTTAGGCTGAAAGCAAAGTTGAAGATCTCCCAATCACGACCAATGGATGCTATTGAAACCTATAGATTCCTTCTTGCATTGGTTCAAGCCCAGAAGAAATCCTTTGGGTCTTCCCAAATTAGTTCAAAGGTTCTGGATGATAAAATAAATGAATTTGATATTTGGCATGGTCTGGCAAATTTATATGCTAGTCTTTCTCGTTGGAAGGATGCCGAAATCTGTCTGCAGAAGGCCAGGGAGTTGAAGAAATATTCTGCTGCAGTAATGCACACTCAAGGTGTTTTGTTTGAAGGACGTGGGGAAAATGACGAAGCTCTTCTTGCTACTATTAATGGTATACTACTTGAACCAAACCATGTTCCATGCAAGATCTTGATGGGTGGCATGATTCAAAGATTGGGTCCAAAGTTTTTTTGTGCTGCAAGAAGCGCACTGTCTGATGCACTCCGAATAGAACCCACTAACCGCATGGCTTGGCATTGCTTGGGATTGCTTAACAAGCAAGATGGCAGAATAAGTGAAGCTGCTGACTGCTTCCAAGCAGCTTCCATGCTTGAAGAATCTGATCCCATCGAATCTTTCAGCTCTATACTTTGA 2082 0.4251 MGSTEHGRVSVREFQANGSRMAASEVEAKLDQGNIQEAEDSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQSSFPEKPPGKKGHAHTESASGSQHAASLVLEAIYLKAKSLQKLGKFTEAANNCKRILDSVEKIFYQGIPNIQVDNKLQEIVSHAVELLPELWKQAGCYDEAISAYRRALLSQWNLDNDYCGRIQKSFVMFLLYSGVEASPPSLAVQIEGSYVPKSNLEEAILLLMVLLRKFSLGKMKWDPSVMEHLTFALSICSQTSILAKQIEELMPGVYHRIDCWNSLAFCYSSAGQNDCALSLLRKSLHKHERPNDLTSLLLAARICSSDPHLAAEGVIYAQRAVNNARDQNEHLKGVALRMLGLCLGKQSKVASSDSERSCLHSKALESLVAAIKLEPNNSDLIFELAVHYAQHRNLSAALRSARNFFNQTGGSMLKSWRLLALILSAQQRFSEAEVVTDAALDQTARWEQGPLLRLKAKLKISQSRPMDAIETYRFLLALVQAQKKSFGSSQISSKVLDDKINEFDIWHGLANLYASLSRWKDAEICLQKARELKKYSAAVMHTQGVLFEGRGENDEALLATINGILLEPNHVPCKILMGGMIQRLGPKFFCAARSALSDALRIEPTNRMAWHCLGLLNKQDGRISEAADCFQAASMLEESDPIESFSSIL* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0946 693 Pfam Tetratricopeptide repeat 28 75 - -
Vra11g0946 693 PANTHER PROTEIN NPG1 1 692 IPR043376 -
Vra11g0946 693 SUPERFAMILY TPR-like 117 442 IPR011990 GO:0005515
Vra11g0946 693 SUPERFAMILY TPR-like 30 202 IPR011990 GO:0005515
Vra11g0946 693 SUPERFAMILY TPR-like 404 677 IPR011990 GO:0005515
Vra11g0946 693 SMART tpr_5 117 150 IPR019734 GO:0005515
Vra11g0946 693 SMART tpr_5 377 421 IPR019734 GO:0005515
Vra11g0946 693 SMART tpr_5 547 580 IPR019734 GO:0005515
Vra11g0946 693 SMART tpr_5 581 614 IPR019734 GO:0005515
Vra11g0946 693 SMART tpr_5 301 334 IPR019734 GO:0005515
Vra11g0946 693 SMART tpr_5 651 684 IPR019734 GO:0005515
Vra11g0946 693 SMART tpr_5 457 490 IPR019734 GO:0005515
Vra11g0946 693 Gene3D Tetratricopeptide repeat domain 20 209 IPR011990 GO:0005515
Vra11g0946 693 Gene3D Tetratricopeptide repeat domain 532 687 IPR011990 GO:0005515
Vra11g0946 693 Gene3D Tetratricopeptide repeat domain 243 530 IPR011990 GO:0005515
Vra11g0946 693 PANTHER CALMODULIN-BINDING PROTEIN 1 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0946 Vra-Chr11 8263469 8273328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0946 11 693 Calmodulin-binding Proteins AT2G43040 69.869 0.0 948
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0946 K21843 - gmx:100814609 1148.27