Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0942 ATGGCTGGGTCACTGACGCCAGGGGCGATAAAAGAAATATGCGGTGCCAATTGTTCCAGTAGTTTGAAACCAGTGTTGCAAGTTATAGATTTGAAGCTGGTGCAGTCGCAACAAGCCAACAACACCGAGAGGTACCGGTTGATTCTTTCTGACGGTTCCTTTTACCAGCAAGGCATGCTCGCCACGCAGATGAACGAACTAGTTCATTCTGGAAAGTTGCAGAAAGGTTCCGTCGTTAGGCTCACGCAGTTCATCTGCAACGATGTCCAGAACCGCAAGATTATTGTCATAATTGACCTAGATGTAGTAGTGGAAAAATGTGAATTGATTGGAGAACCTGTCTCCTTACCAAAAGATGGATCTGTAGAATCTGGTACTGGTCAATCAGGAGTCACCCCTGGGAATTCACAATCTTTGAATAACCGTTCACACTCAGGAGGCATGGCTGCTAGACCGAATGTAGGTGGCATGGCTGCTAGACCGAATATGGCCATACCATCTCCAGATCTTCCAAGAATGAATGCTCCTGCCAGTAGTGCTTATTCTGGCATTTCCAACACTGGATCTAGTTATTCTAGTGATGCACCTCCTACATATCCTAAAGTAGAATCCGGAGCTAATTTTTCTAGATCAGCACCATTTACTGGATCTCATGGTGATCAGAACATGGGTATTCGTCATCCCCAATCTGAGACTTCAAGGCCCTTGCCAAACTCTTATGCTCGTGCACCTCAGCCTATGTATCGGCAACCATCTCCAATGTACACTAACAGAGGGCCAATTGGAAAAAATGAAGCTGCCCCCAGGATAATTCCAATAGCAGCATTGAATCCTTACCAGAATATGTGGACGATTAAAGCCAGGGTAACAGCTAAGGGAGAACTCAGGCACTATAACAATGCTCGAGGTGATGGCAAGGTGTTTTCATTTGACCTTTTGGATTCTGATGGTGGGCAAATTCGGGCAACTTGCTTCAATAGTGTGGCTGATCAGTTCTATAATTTGATTGAAGCTGGTAAGATATACCTAGTTTCCAGGGGAAGCGTAAAGCCAGCTCAGAAGAATTTCAATCGCCTTCCCAATGATCAAGAGTTAACCCTTGATATGACATCCATCATACAACCATGCCCCGATGATGATAACTCAATTCCAAAGCAGACTTTTAATTTTCGGCCCATTAGTGAAATTGAAAGTTTGGAAAGCAACACCATTGTGGATGTGATTGGTGTGGTGACTTCAATTAGTCCTACAGCTTCAATCATGAGAAAAAATGGTACTGAAACTCAGAAGAGAACACTCCAGTTGAAAGACATGTCTGGTCGAAGTGTCGAGTTAACTTTGTGGGGAAATTTTTGCAACGTGGAAGGACAAAGGCTGCAAACTATTTGTGATGATGGGAAATTTCCAGTTTTGGCTACAAAAGCTGTCAGAATTAACGATTTCAATGGAAAGTCTGTTGGGACTATAATGACTAGCCTACTGTTCATAGAGCCTGATTTTCCAGAGGCTTACTCACTGAAAAGATGGTTTGAAAAGGAAGGGAAGAATGTCCCAACTCTCTCTATCTCTAAAGATACATCTAGTTTTCCTAAGAATGATAATCGGAAGACTGTATCTCAAATTAAAGACGAGAAGTTAGGGACTTCGGAGAAGCCTGATTGGATATCTGTCTGTGCAACTATTTCATTCATGAAGTATGATAACTTCTGTTACCCAGGATGTCCTATCATGATAGGGGATAGGCAATGTAACAAAAAAGTGACTAATAATGGTGATGGAAAATGGATTTGTGATAGGTGTAACCAATCTGTTGACGCTTGTGATTATAGGTACATACTGTCATTCCAGATAATGGATCACACAGGTGTAACATGGGTTACTGCTTTCCAGGAGAGTGGTGAGGAGATAATTGGCCTGCCTGCAAAAGATTTGTATTATCTGAAGTATGAAGAGCAAAATGATGAAAGATTTGCTGAAATCATCCGGAAGGTTCTCTTCTCCGAGTATGTGTTCAAGTTGAAAGTAAAAGAGGAAACATTCAGTGATGAACAACGTGTTAAGGCAACTGTGGTTAAAGCAGAAAAGGTAAACTTTGCATCTAAATCCAGAGTTAGTTTGGAATTGATTGATAAACTCTTGACTGGGAAATCAGAAGGTGCTACCACCGTTACCAACTCATTATCCGGTAATACTGGACTGGGGAGTGTTGAAACTGGTCAAGTAATGCCACCGGCTTATAACCCAATAAAGAGTAGCACTAATAGCAGTAGAGATTTTGGGATGCCAGCAAATCAAGTGGGTCAACAATATGGAAATCAATATGGCAATTTTGCTTCAGCAGGTGCTCCTGGTGCATATACATCATGCACCAACTGTGGAGGTTCTGGTCATACTTCTATACTTTGCCCAAATGTTAGAAATCCGGCTGGACAGTCTTCAGGAGGGGGCTTTTCCAACAGGGTATCATATGGTGGATCTGGTGGTGGTGCTTCTGGTGAATGCTTTAAATGCCATCAACCTGGCCACTGGGCAAGAGACTGTCCTGGTTCCAGTGCAGCAACTGCATCATATGGAAGCAATACAATGCAGGGAAGATATGGAGGATATTGA 2610 0.4268 MAGSLTPGAIKEICGANCSSSLKPVLQVIDLKLVQSQQANNTERYRLILSDGSFYQQGMLATQMNELVHSGKLQKGSVVRLTQFICNDVQNRKIIVIIDLDVVVEKCELIGEPVSLPKDGSVESGTGQSGVTPGNSQSLNNRSHSGGMAARPNVGGMAARPNMAIPSPDLPRMNAPASSAYSGISNTGSSYSSDAPPTYPKVESGANFSRSAPFTGSHGDQNMGIRHPQSETSRPLPNSYARAPQPMYRQPSPMYTNRGPIGKNEAAPRIIPIAALNPYQNMWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGQIRATCFNSVADQFYNLIEAGKIYLVSRGSVKPAQKNFNRLPNDQELTLDMTSIIQPCPDDDNSIPKQTFNFRPISEIESLESNTIVDVIGVVTSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNVEGQRLQTICDDGKFPVLATKAVRINDFNGKSVGTIMTSLLFIEPDFPEAYSLKRWFEKEGKNVPTLSISKDTSSFPKNDNRKTVSQIKDEKLGTSEKPDWISVCATISFMKYDNFCYPGCPIMIGDRQCNKKVTNNGDGKWICDRCNQSVDACDYRYILSFQIMDHTGVTWVTAFQESGEEIIGLPAKDLYYLKYEEQNDERFAEIIRKVLFSEYVFKLKVKEETFSDEQRVKATVVKAEKVNFASKSRVSLELIDKLLTGKSEGATTVTNSLSGNTGLGSVETGQVMPPAYNPIKSSTNSSRDFGMPANQVGQQYGNQYGNFASAGAPGAYTSCTNCGGSGHTSILCPNVRNPAGQSSGGGFSNRVSYGGSGGGASGECFKCHQPGHWARDCPGSSAATASYGSNTMQGRYGGY* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0942 869 Gene3D - 521 712 IPR012340 -
Vra11g0942 869 SMART c2hcfinal6 788 804 IPR001878 GO:0003676|GO:0008270
Vra11g0942 869 SMART c2hcfinal6 833 849 IPR001878 GO:0003676|GO:0008270
Vra11g0942 869 MobiDBLite consensus disorder prediction 205 253 - -
Vra11g0942 869 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 239 710 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vra11g0942 869 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vra11g0942 869 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Vra11g0942 869 ProSiteProfiles Zinc finger CCHC-type profile. 834 848 IPR001878 GO:0003676|GO:0008270
Vra11g0942 869 Pfam Zinc knuckle 833 848 IPR001878 GO:0003676|GO:0008270
Vra11g0942 869 MobiDBLite consensus disorder prediction 115 151 - -
Vra11g0942 869 SUPERFAMILY Nucleic acid-binding proteins 388 517 IPR012340 -
Vra11g0942 869 SUPERFAMILY Retrovirus zinc finger-like domains 818 850 IPR036875 GO:0003676|GO:0008270
Vra11g0942 869 MobiDBLite consensus disorder prediction 205 239 - -
Vra11g0942 869 PANTHER REPLICATION PROTEIN A SUBUNIT 5 745 - -
Vra11g0942 869 Pfam Replication factor-A C terminal domain 554 703 IPR013955 -
Vra11g0942 869 MobiDBLite consensus disorder prediction 121 147 - -
Vra11g0942 869 CDD RPA1_DBD_C 538 711 IPR013955 -
Vra11g0942 869 PANTHER REPLICATION FACTOR A 1, RFA1 5 745 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vra11g0942 869 Gene3D - 3 117 IPR012340 -
Vra11g0942 869 Gene3D - 269 379 IPR012340 -
Vra11g0942 869 Gene3D - 381 520 IPR012340 -
Vra11g0942 869 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vra11g0942 869 Pfam Replication protein A OB domain 393 496 IPR031657 -
Vra11g0942 869 CDD RPA1_DBD_A 272 374 - -
Vra11g0942 869 Pfam OB-fold nucleic acid binding domain 283 370 IPR004365 GO:0003676
Vra11g0942 869 Gene3D - 785 857 - -
Vra11g0942 869 CDD RPA1_DBD_B 404 511 - -
Vra11g0942 869 SUPERFAMILY Nucleic acid-binding proteins 270 383 IPR012340 -
Vra11g0942 869 SUPERFAMILY Nucleic acid-binding proteins 534 713 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0942 Vra-Chr11 8218506 8222152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0942 1 815 Core DNA Replication Machinery Family AT5G45400 51.147 0.0 836
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0942 K07466 - gmx:100778597 1287.71