Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0938 ATGGCCGAGGCTTTAGTGGAAAGCGTGATTGAAAATTTGGGATCTTTATTTCAAGACCAACTTGCAATTTATTGGGGCGTTGATCAGCAGACTGAGAAGCTTTCCAGCAATCTCAGAGCAATCCGTGCTGTCCTCAGAGACGCTGAGAGAAAGCAAATCACAAGCTATGCAGTGAAGGATTGGCTGCAGAAACTCACAGATGCAGCATATGTGCTTGATGATATCTTAGATGAATGTTCAATTCACTCCACAAAGATGCACTCTGTTGATGGTCATATTTCACGCCTATCCCGTCTCCATCCTAAGGACGTTCTCTTTCGCTTTCATATTGGAAAGAGGATGAAAGACATCACCCAAAGATTTCACAACATTCATGAAGAAAGACTCACATTTGAATTGCGTGTGGGTGTCACGGAGAAGCAAGCAGTGAATGATGATGATGATGATGATTGGCGTCAAACTAGCTCAGTAATTACCGAACCCATATTCTGTGGCAGAGACAAGGATCGAGAGAAGATTGTGAAGTTTCTGTTGGAAGATGCTAGTAACAGTGAAGACCTCAGCATCTATCCCATAGTTGGTATGGGTGGACTTGGCAAAACAACTCTTGCCAAACAGGTCTTCAATGATCACGAGATAAGTAAACATTTTGACTTGAGAATTTGGATCTGCGTTTCGGAAGATTTCAATGTGAAGAGAATACTGCAATCCATCATAGAATGTACCATTGGTCAAAATCCCAACCTTGGTGATTTAGAAGCAAGGCGTAGAAAGGTTGAGGAAGCATTGCAGAACAAGAGGTATTTGCTTGTTCTTGATGATGTGTGGAATGAGAACACAGAGAAATGGAAGGAGTTGAAGGGGATGTTGGAGTGTGCAAATGGAGCAAAGGGAACTACCATTTTGGTCACTACTCGACTCGAGGAAGTAGCTTCCATCGTGGGAACGCATTCTGCTTACCGTTTGAAAGTATTGTCAGAAGATGACAGTTGGTCATTGTTCAAACACCATGCATTTGGACCAAACAGAGAAGAAAGGGAGGAACTTGTAACAATCGGAAAACAGATAATGAGGAAATGCGTTGGTTCACCACTTGCAATCAAAACCTTGGCAAGCTGTTTGCGTGATGAAACTGAGGTAAGGCAATGGGAAAATGTAAAGAAGAGTGAAATTTGGAATATACAAGAAGAAAGTAGTAGTTCTATGACAGGTGAGGAAAATTCTATTATGCGTGCTTTGAAATTGAGCTATTCTAATTTGAAGTCGTCTATGAAGAGATGTTTTTCTTTTTGTGCAATTTTCCCCAAAGATTTTGAAATAGACAAGGAAGAACTTATTCATCTCTGGATGGCTAATGGATTTATTAAATGTGAAGGAAATGTAGAAGTGGAGGATGTTGGGAATAAAGTGTGGAAAAAATTATACCGTAGATCATTTTTTCAAGAAGCTAAGTATGATGAAGTTGGTATGATCACTACTTTCAAGATCCATGATCTATTTCATGATCTTGCCCAGTCTATTATGGGTGAGGAATGTGTGGTTATTGTGAAAGGAAGATTGACTCAATTGCCAACTAGAGTTCACTATTCAAGCTTGCTCAATTCTGGTGTGTCTGGTTATATGACTGCTTTCAAGCAAAGATTGACGACTGCTTTGAAGAAGGTTAAATCCCTGCAGAGTTTTCTTGATTTTGGTGGTATTGGCCCGGTTCCATCAAATCATAGTCTCCGAGCATTGCAAACAAGCTCTTCTTTGTTGTCCCCACTCAAGGATTTAACACTTTTGAGATATTTGAGTTTGAGATTTAGTCAGAGCTCAGAAGAAAACTTAAATAACTCAATTTGTCAGTTGCCAAAATTGCAAATATTGAAACTGTTTCATTGCCCCGAACTTCATGGGTTGCCTAAGGATTTGACACGATTACAGGATCTGAGGCATATTGTGATTGATGGCATGGATACAATACAAGAGATGCCTCCGAATATTGGCAAGTTAAGGCATCTAAGAACACTGAGCATTTTCGTGGTGGGTTCAAAGCCAGGGTGTGGCTTAGCAGAGTTGCATAGCTTAAATCTGAGAGGCACGCTGAGCATCAGAGGCCTTGAGAACGTCCTCAATGAATTGGATGCTAAAGAAGCAAATTTGATTGGTAAGAAGGAGTTGAATATCCTAGAGTTGTCATGGGATGGTAGTGGTAATCCAAAAGGCAGTAATGTAAGTGTGGAGAGAGTACTGGAAGCCCTAGAACCTCCCTCAACTCTCAAGAGTTTTCAAATGGATGGATATCAGGGAAGGCAGTTTTCGAGTTGGATGAGAAGTTCTCTAGTTTTGAGAGACTTGGTGAATGTTATACTCTCCGACTGTGAGAACTGTGAGGAGCTTCCCCCACTTGGTAAACTTCCACACTTGAAAAGACTAATTGTGAGTGGAATGAAAAATGTGAAGTGGATAGATGGTGAGACGTATGACGGCGTGGAAGAGAAGGCATTTCCATCGTTGGAGGAACTGATTGTGGATAATTTACCAAATTTGGAGAGGTTGTTGAGGGATGAAGGAGTAGAGATGCTTCCTCGTCTTTCCCAATTAACAATTGAAGATGTGTTGAACTTTAAAGTCCCACGTCTTCCTTGTGTGGAGACACTTGATGCTAGAGGAATTGAGGCAGGGACTTCTTTCATGGAAGGGGTTGGGGAGAATATGGCTTGTCTAGAGACCTTGATCATTAAAATCATTAAAGGAGTGGTGGTATTACCCGACGAATTCAGGAGGTTGGGTGCACTACAGGAACTATACATTGGAGAATGGTATGATGTGGAGTATTTTCCAGAACACGTGGTGGAAGGTCTAACTTCTCTTCGAACTTTGTCCATTAAAAACTGTGAGAAATTGAAATCGTTGTCTGAAGGTGTGGGACATTTGGCTTGTCTTGAGAGGTTGTGGATCGAAAAATGTCCAGAGCTAGTGGCTCTACCAAGCAATATGAGTCAACTATCTGCCCTGCGGAATGTTTCAATCCAACTTTGCTGCACATTACCAGATGGCTTACAACGTGTCCCCTCCCTACGAGTTTTATTTATAGAGAAATGCACGTGTACTTCATTGCCGGACTGGCTGGGAGATATGACTACTCTTGAACGATTATTCATTTGGCACTGTGAGGAGTTGAGGTCACTGCCGAGTAGCATTCAACGCCTCACCAACTTGTCTTATTTAAGTATAGAAGGATGTCCTCATCTGAAGAAGCGGTGCAAGAGGGAAACAGGAGAGGATTGGCAATACATAAACCACATTCCGCAATTATTTGTGGACGGAAACGACGTTTTGTGA 3327 0.4157 MAEALVESVIENLGSLFQDQLAIYWGVDQQTEKLSSNLRAIRAVLRDAERKQITSYAVKDWLQKLTDAAYVLDDILDECSIHSTKMHSVDGHISRLSRLHPKDVLFRFHIGKRMKDITQRFHNIHEERLTFELRVGVTEKQAVNDDDDDDWRQTSSVITEPIFCGRDKDREKIVKFLLEDASNSEDLSIYPIVGMGGLGKTTLAKQVFNDHEISKHFDLRIWICVSEDFNVKRILQSIIECTIGQNPNLGDLEARRRKVEEALQNKRYLLVLDDVWNENTEKWKELKGMLECANGAKGTTILVTTRLEEVASIVGTHSAYRLKVLSEDDSWSLFKHHAFGPNREEREELVTIGKQIMRKCVGSPLAIKTLASCLRDETEVRQWENVKKSEIWNIQEESSSSMTGEENSIMRALKLSYSNLKSSMKRCFSFCAIFPKDFEIDKEELIHLWMANGFIKCEGNVEVEDVGNKVWKKLYRRSFFQEAKYDEVGMITTFKIHDLFHDLAQSIMGEECVVIVKGRLTQLPTRVHYSSLLNSGVSGYMTAFKQRLTTALKKVKSLQSFLDFGGIGPVPSNHSLRALQTSSSLLSPLKDLTLLRYLSLRFSQSSEENLNNSICQLPKLQILKLFHCPELHGLPKDLTRLQDLRHIVIDGMDTIQEMPPNIGKLRHLRTLSIFVVGSKPGCGLAELHSLNLRGTLSIRGLENVLNELDAKEANLIGKKELNILELSWDGSGNPKGSNVSVERVLEALEPPSTLKSFQMDGYQGRQFSSWMRSSLVLRDLVNVILSDCENCEELPPLGKLPHLKRLIVSGMKNVKWIDGETYDGVEEKAFPSLEELIVDNLPNLERLLRDEGVEMLPRLSQLTIEDVLNFKVPRLPCVETLDARGIEAGTSFMEGVGENMACLETLIIKIIKGVVVLPDEFRRLGALQELYIGEWYDVEYFPEHVVEGLTSLRTLSIKNCEKLKSLSEGVGHLACLERLWIEKCPELVALPSNMSQLSALRNVSIQLCCTLPDGLQRVPSLRVLFIEKCTCTSLPDWLGDMTTLERLFIWHCEELRSLPSSIQRLTNLSYLSIEGCPHLKKRCKRETGEDWQYINHIPQLFVDGNDVL* 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0938 1108 Gene3D - 148 319 IPR027417 -
Vra11g0938 1108 Gene3D - 422 506 IPR036388 -
Vra11g0938 1108 CDD RX-CC_like 2 124 IPR038005 -
Vra11g0938 1108 Gene3D Ribonuclease Inhibitor 547 869 IPR032675 -
Vra11g0938 1108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 431 IPR027417 -
Vra11g0938 1108 Gene3D Ribonuclease Inhibitor 1007 1085 IPR032675 -
Vra11g0938 1108 Coils Coil 701 721 - -
Vra11g0938 1108 PRINTS Disease resistance protein signature 189 204 - -
Vra11g0938 1108 PRINTS Disease resistance protein signature 262 276 - -
Vra11g0938 1108 PRINTS Disease resistance protein signature 360 374 - -
Vra11g0938 1108 PRINTS Disease resistance protein signature 947 963 - -
Vra11g0938 1108 Pfam NB-ARC domain 167 419 IPR002182 GO:0043531
Vra11g0938 1108 Gene3D - 324 421 IPR042197 -
Vra11g0938 1108 Gene3D - 5 111 - -
Vra11g0938 1108 SUPERFAMILY L domain-like 495 866 - -
Vra11g0938 1108 PANTHER OS10G0130600 PROTEIN 6 870 - -
Vra11g0938 1108 Coils Coil 31 51 - -
Vra11g0938 1108 PANTHER DISEASE RESISTANCE PROTEIN RP 6 870 IPR044974 GO:0006952
Vra11g0938 1108 SUPERFAMILY RNI-like 839 1101 - -
Vra11g0938 1108 Pfam Rx N-terminal domain 5 89 IPR041118 -
Vra11g0938 1108 Gene3D Ribonuclease Inhibitor 870 1006 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0938 Vra-Chr11 8155800 8159482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0938 186 695 WRKY Transcription Factor Family AT5G45050 22.628 1.54e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0938 - - vra:106776709 1584.7