Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0934 ATGGAGGGTGGGAACATAAGACAGTGGTTGAATTTTCTGGTTTGTGCACTGCTGTTGCTGATAGCAGAGGCTTCTTATGTGCCAATCACCTATCTTCAGAACGCTGTAGCAAAAGGAGCTGTTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAGGGGATCTGGAACAGGGATCAACAATTGGTTGGTTGCTTTTGAGGGAGGAGGATGGTGCAACAATGTCACTACTTGTCTCTCTCGCAAGACCAATCGTTTAGGTTCATCCAAGCAAATGGCAAAGCAAATTGCCTTTTCGGGAATTATGAGTAACAGGCAAATGTTTAATCCAGATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGCGATGGTTCATCTTTTACTGGTGATGTAGAAGAAGTCAATCCAGTTACTAAGTTGCACTTTAGAGGAGCAAGGATTTTTGCTGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAATGCTATTATTTCTGGATGTTCAGCTGGAGGATTAACTTCAGTACTGCATTGTGATCGCTTCCGAGCTCTATTACCTAGAGGAGCCAGAGTGAAATGCCTCTCAGATGCTGGTTATTTTATCAATGCAAGGGATGTCACTGGGGCATACCACATTCAACAGTACTTCAGTCAAGTTGTTGCTACTCATGGCTCTGCAAGGAATTTGCCTCAGTCATGCACTTCAAGACTTAGCCCAAAGCTATGCTTTTTCCCACAATATTTAGCATCACATATCACTACGCCAATCTTCTTTGTAAATGCAGCATACGACTCATGGCAGATTAAGAACATTTTGGCACCTGGTGTTGCTGATCCTGAAGGCCATTGGCATAGCTGTAAGCTTGATATAAACAACTGTTCACCTGATCAATTAGATCTAATGCAAGGCTTCAGGACAGAATTTTTAAGGGCATTGACAGTGCTAGGCAACTCTTCATATAAAGGAATGTTTATAGACTCTTGCTATGCCCACTGCCAAACTGAAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAACTGGAAAAGACAACAATTGCACAGGCTGTAGCAGACTGGTTTTATGAAAGAAGGACTTTCCATCAGATAGATTGCCCTTACCCCTGCAACCCCACTTGTCACAACCGCGTTTTTGGACCAGAAGACGACCACCAAGGAGCACAGTGGATTGAGCTTGTGTGCATTAATGGAGGAATCAATGGGCTTCTACTACTAACGTTGGGTCTTATGAGGGGTGACATTTATATGGGTCCTTCTTCCATCTTGTAG 1308 0.4312 MEGGNIRQWLNFLVCALLLLIAEASYVPITYLQNAVAKGAVCLDGSPPAYHFDRGSGTGINNWLVAFEGGGWCNNVTTCLSRKTNRLGSSKQMAKQIAFSGIMSNRQMFNPDFYNWNRIKVRYCDGSSFTGDVEEVNPVTKLHFRGARIFAAVMEDLLAKGMKNARNAIISGCSAGGLTSVLHCDRFRALLPRGARVKCLSDAGYFINARDVTGAYHIQQYFSQVVATHGSARNLPQSCTSRLSPKLCFFPQYLASHITTPIFFVNAAYDSWQIKNILAPGVADPEGHWHSCKLDINNCSPDQLDLMQGFRTEFLRALTVLGNSSYKGMFIDSCYAHCQTEMQETWLRSDSPELEKTTIAQAVADWFYERRTFHQIDCPYPCNPTCHNRVFGPEDDHQGAQWIELVCINGGINGLLLLTLGLMRGDIYMGPSSIL* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0934 435 Pfam Pectinacetylesterase 22 372 IPR004963 GO:0016787
Vra11g0934 435 SUPERFAMILY alpha/beta-Hydrolases 143 272 IPR029058 -
Vra11g0934 435 PANTHER PECTIN ACETYLESTERASE 5 405 - -
Vra11g0934 435 PANTHER NOTUM-RELATED 5 405 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0934 Vra-Chr11 8109834 8115193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0934 6 395 Carbohydrate Esterase AT4G19420 62.118 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0934 K19882 - gmx:100776478 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0934 11 8109834 8115193 Vra11g0934 11 8109834 8115193 ECH
Vra11g0934 11 8109834 8115193 Vra7g0293 7 4499392 4503049 PCT
Vra7g0292 7 4463409 4468360 Vra11g0934 11 8109834 8115193 PCT