Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0933 ATGGGGTCCGGTGGCAGCAAAGCCAGGTCATCGTCGTCGTCTTCGGGGAGTTTCAGGAAGGGTCGATCTAAGGGGCACAGAGGTTTCCCATCTTATTGTCTCGGAACGTCGTCTGGATCTCGTGACATTGATAGTGACGACCAGGTTTGTGATCAGGATAAAGTAAACCGAGATGATGTGACATACACCAGTGGCAATGAAATAGACTCAGATGAAGGGAAGACAGAGTCCTTTAGAAAGGTGAAACCTGCTAAATCTGATGAAGTGCCTTCTAACATTGATCTTGAAGAGTGGCGTCACAGTGCATCCAGAACTGGTAGCAGCTCTGCACATTCTTCTTCAAACCACTCCTTGAACCCCTCAAGTCGGTTCTTGTCTCGCTTTAGCCTTGTTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGATCATCTAGGCCTTGCCCTGTTTCTTCAACAAGTCTCGCAATATTTAATGATGAAGATGAGCTTAGTCTACATCCAGGGCCTCCTGGCAGCTTGATTAATAGAAATGAAACTCAACAGCGTAGTGATTTGCTCAATGCATCTTTTGTTAGTCAAGTGCCTATGCAGTGTCATGAAGAAGCTTCTAATAATTTGCGCCCTAATGCCCCAGCATTGGTTTCACCTGGTAATTTGGCTAGTAGTCGCCCAGTTTCTTCCATCCAGGATGTGGGTAGAGATGGAAATGGTGCAAGAGAAGTACCTGATGCCAACATGTTTTCACCAAGAATTCATACTGATAGAGAAAATATTGAGACTAGACATACTGATAGGCGAAATGGAGCTCGAGAACCTGTGGAGCGTAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTCCGTGACAGAGTTCTCCGCCGATCAACATTGTCAGACTTCACCTTTTGCCCTATGCAACGAGAGAGAGAAGTAAGAGAGGCTGGTCAAGAGAATGGAAGACGAGTAGGGGATAGAGAAGCAAGAGTGTCACCAACTGGTCGTAATGCTTCAAATTCTTCTACACCTAGATATCCTCTACCCAGTACACCTAGCTCTTTGTTTGGCATCCAAGACTATGAAGTTGAGACTTCACGTTCTAGAGAAACTAGGTATCAGGATCTGCTGGAACATAGGACCAATTTCCTGGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACACAGAAACGGTCGTTGTGCATGCAGAACCAATAGTCGGGATACCAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTGTTTGAACAATCTGTGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCCATTCCTGCACCTAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGTATGAGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTGTAGACAAGTGGCTGAAGGAGATTCACAGGGTGTGCCCGCTATGTCGAGGGGATATCTGTGTATCTGATTCACTACCAAGGGAGAACTAA 1686 0.4472 MGSGGSKARSSSSSSGSFRKGRSKGHRGFPSYCLGTSSGSRDIDSDDQVCDQDKVNRDDVTYTSGNEIDSDEGKTESFRKVKPAKSDEVPSNIDLEEWRHSASRTGSSSAHSSSNHSLNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSTSLAIFNDEDELSLHPGPPGSLINRNETQQRSDLLNASFVSQVPMQCHEEASNNLRPNAPALVSPGNLASSRPVSSIQDVGRDGNGAREVPDANMFSPRIHTDRENIETRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDFTFCPMQREREVREAGQENGRRVGDREARVSPTGRNASNSSTPRYPLPSTPSSLFGIQDYEVETSRSRETRYQDLLEHRTNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRTNSRDTNSNDDTNARASISRIVMLAEALFEQSVVLSSRPSVSSIGSIPAPNEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCVDKWLKEIHRVCPLCRGDICVSDSLPREN* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0933 561 MobiDBLite consensus disorder prediction 44 60 - -
Vra11g0933 561 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 561 - -
Vra11g0933 561 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 561 - -
Vra11g0933 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 553 IPR013083 -
Vra11g0933 561 MobiDBLite consensus disorder prediction 69 101 - -
Vra11g0933 561 MobiDBLite consensus disorder prediction 316 333 - -
Vra11g0933 561 MobiDBLite consensus disorder prediction 102 120 - -
Vra11g0933 561 MobiDBLite consensus disorder prediction 1 120 - -
Vra11g0933 561 MobiDBLite consensus disorder prediction 1 19 - -
Vra11g0933 561 MobiDBLite consensus disorder prediction 316 357 - -
Vra11g0933 561 MobiDBLite consensus disorder prediction 221 248 - -
Vra11g0933 561 Pfam Ring finger domain 505 548 IPR001841 -
Vra11g0933 561 CDD mRING-H2-C3H2C2D_ZSWM2 505 548 - -
Vra11g0933 561 MobiDBLite consensus disorder prediction 336 357 - -
Vra11g0933 561 SUPERFAMILY RING/U-box 484 554 - -
Vra11g0933 561 ProSiteProfiles Zinc finger RING-type profile. 506 548 IPR001841 -
Vra11g0933 561 SMART ring_2 506 547 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0933 Vra-Chr11 8101334 8106444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0933 232 555 C3H Transcription Factor Family AT5G45290 59.587 6.00e-111 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0933 - - gmx:100815830 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0933 11 8101334 8106444 Vra11g0933 11 8101334 8106444 ECH
Vra11g0933 11 8101334 8106444 Vra7g0294 7 4519655 4524351 PCT