Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0932 ATGAAGAGCATAAACGACGACGGTTCCACGCAAGATCTCGACCCTCAGAGCGACCACAGCTCCGATTACTTAACTCACCCAAACTCTAACCCCCAGCCTCACCCTCACCCGCGCCGTCCCCGGGGTTTCGCGGCGGCGGCGGCGGTCACTACCAATTCCGTTGCCAAGGGAAAGAAGGAGAGAGAGAAGGAGAAGGAGCGAACCAAGCTCCGGGAGCGACACCGCCGGGCCATCACCAGTCGCATGCTCGCCGGCCTCCGCCAGTATGGCAATTTCCCCCTGCCCGCCCGTGCAGACATGAACGACGTACTCGCCGCGCTCGCGCGTGAGGCTGGTTGGGTTGTTGACGCCGATGGAACCACCTATCGCCAGTGTCCCCCTCCCTCTCACATGGGGTCATTTGCGGCTAAATCAGTTGAAAGTCAACTCTCTGGTGGTTCTTTGAGGAATTGTTCTGTTAAGGAAACGATTGAGAATCAGACATCTGTGCTTAGAATTGATGAATGCTTGTCGCCTGCATCCATTGATTCTGTTGTAATTGCAGAAAGGGACTCAAAGAACGAGAAATATACAAATGCAAGCCCCATCAATACTGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTGCACGAAAATGATTTTACTGGCACACCATATGTTCCTGTTTATGTAAAGCTTCCGGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCTGAAGGCATTAGGCAGGAGCTTATGCATATGAAGTCTTTAAATGTAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCCCACAGAAATACGTGTGGTCTGGCTATAGGGAACTTTTTAACATCGTTAGAAAATTCAAACTTAAGTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCATTGATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGATATATTCTTCACAGATCGTGAAGGACGGAGGAATACTGAATGCCTTTCTTGGGGGATAGACAAAGAACGAGTTCTGAAAGGAAGAACTGGGATTGAGGTCTATTTCGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTCTGCTGTTGAAGTTGGACTTGGAGCATCCGGAGAGCTGAAATATCCTTCTTTCTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAACATAGTCTGCGGAGAGCGGCCAAATTACGTGGTCATTCTTTCTGGGCTAGAGGACCTGATAATGCTGGACATTACAATTCTATGCCGCATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGACAATTACTATGGACGATTCTTCTTACATTGGTACTCCCAGACATTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAACCCTTGCTTTCGAGGAGACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTACAAGACTCCTAGTCATGCGGCAGAGTTGACAGCAGGATATCACAACCCAACAAATCAGGATGGGTACTTTCCTGTGTTTGAGGTTTTAAGAAAACATGCTGTCACTATGAAATTCGTCTGCTTAGGGTTTCATCTTTCCAGCCAGGAAGCTAACGAATCATTGATTGATCCTGAGGGTCTGAGTTGGCAGGTGTTAAACTCAGCTTGGGATCGTGGGTTGATGGCTGGTGGAGAAAATGCACTCCTTTGCTACGATAGAGAAGGGTACAAAAGATTGGTTGACACGGCAAAGCCGAGAAATGATCCTGATCATCGACATTTTTCATTCTTTGTTTACCAGCAACCATCTTTGCTGCAGGCTAATGTTTGCTTGTCCGATTTGGATTTCTTCGTTAAATGCATGCATGGTGAGATGACGGATCTGTAA 1974 0.463 MKSINDDGSTQDLDPQSDHSSDYLTHPNSNPQPHPHPRRPRGFAAAAAVTTNSVAKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSHMGSFAAKSVESQLSGGSLRNCSVKETIENQTSVLRIDECLSPASIDSVVIAERDSKNEKYTNASPINTVDCLEADQLMQDIHSGVHENDFTGTPYVPVYVKLPAGIINKFCQLIDPEGIRQELMHMKSLNVDGVVVDCWWGIVEGWSPQKYVWSGYRELFNIVRKFKLKLQVVMAFHECGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEVGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLATLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYFPVFEVLRKHAVTMKFVCLGFHLSSQEANESLIDPEGLSWQVLNSAWDRGLMAGGENALLCYDREGYKRLVDTAKPRNDPDHRHFSFFVYQQPSLLQANVCLSDLDFFVKCMHGEMTDL* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0932 657 MobiDBLite consensus disorder prediction 1 72 - -
Vra11g0932 657 Pfam Glycosyl hydrolase family 14 244 618 IPR001554 GO:0000272|GO:0016161
Vra11g0932 657 PANTHER BETA-AMYLASE 8 60 655 - -
Vra11g0932 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 260 274 IPR001554 GO:0000272|GO:0016161
Vra11g0932 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 281 299 IPR001554 GO:0000272|GO:0016161
Vra11g0932 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 303 324 IPR001554 GO:0000272|GO:0016161
Vra11g0932 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 396 418 IPR001554 GO:0000272|GO:0016161
Vra11g0932 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 469 488 IPR001554 GO:0000272|GO:0016161
Vra11g0932 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 503 519 IPR001554 GO:0000272|GO:0016161
Vra11g0932 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 520 531 IPR001554 GO:0000272|GO:0016161
Vra11g0932 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 538 561 IPR001554 GO:0000272|GO:0016161
Vra11g0932 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 576 598 IPR001554 GO:0000272|GO:0016161
Vra11g0932 657 Pfam BES1/BZR1 plant transcription factor, N-terminal 56 202 IPR008540 -
Vra11g0932 657 PANTHER - 60 655 IPR001554 GO:0000272|GO:0016161
Vra11g0932 657 SUPERFAMILY (Trans)glycosidases 220 654 IPR017853 -
Vra11g0932 657 MobiDBLite consensus disorder prediction 55 72 - -
Vra11g0932 657 MobiDBLite consensus disorder prediction 1 29 - -
Vra11g0932 657 Gene3D Glycosidases 216 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0932 Vra-Chr11 8092089 8099711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0932 14 656 Glycoside Hydrolase AT5G45300 66.964 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vra11g0932 Glyco_hydro_14 5.7e-87 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0932 K01177 - gmx:100777004 1241.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0932 11 8092089 8099711 Vra11g0932 11 8092089 8099711 ECH