Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0930 ATGAACACTTTTTCTGTCCTTTTTCCATCGTTTTGTTCTGTAGCATGTCTTCCCATGCTTGTCTTCTTTATTATCAACTCTCTCTTGTGTGTCCCAAGCACTGCTGCCTCTATATTGGGAAACCAGACCGACCATTTGTGGCCTGGAGTTACATGTGATTCCATGAATCAAAGAGTTATAGAGTTAAACCTAGAAGGAAAACAGTTACAAGGTCTCATACCACCCCATATAGGCAATCTCTCTTTCCTAACCAGGCTTAACCTTGGAAACAACAGCTTTTGTGGAAAAATTCCACAAGAACTGGGTCGGTTGTTACAGTTACAAAACCTATCTCTCACCAATAACTCTTTGAAAGGAGAAATACCTGCAAACTTGACAAGATGTTCTAACCTTAGAGAGTTACACTTGTTTGGTAACAATTTGATTGGTGAAATACCAATGGAAATTGGCTACCTGAAAAAGCTTCAAGAACTGACCTTGGCAGTAAACAATCTCACAGGAGTAATCCCATCTTCCATAGGGAATCTTTCATCTCTTGTTTCTCTCTCAATCGGTGTCAATTACTTCGAGGGAAATATTCCACAAGAAATTTGTCTCCTCAAAAACTTGTCATTGATGTCATTGCATGTCAACAAGCTGATAGGTACATTTCCTTCTTGTCTTTACAATATGTCATCTCTTACCATTATTTCAGCTGCAGACAATCAATTTAATGGCTCCCTTCCACCAAACATGTTCCACACTCTCCCTAATCTCCGAGAATTCCTTGTTGGTGGGAATCATATCTCAGGTTCAATCCCAACTTCCATTGCAAATTCATCTGTCCTCCAAACACTTGATGTTGGTACAAATCATTTAGAGGGCCAAGTTCCAAGTCTTGGAAAGCTGCAATACCTTTGGTTCCTTAGTCTGTATAGCAATAACTTAGGGGACAACACGACAAAGGACTTGGAGTTTTTAAAATCCTTAGCCAATTGCAGCAAGTTGGAAGTGGTTTCTATTTCCTATAATAGTTTTGGAGGTAGTTTGCCGAATTTTATGGGAAATTTATCCACCAAACTTAGTCAATTATATCTTGGGGGTAATCACATATCAGGAAAAATTCCTGCAGAAATAGGCAATCTAGTTAGCTTAACTATCTTGACCATGGAAATTAACCACTTTGAAGGAGCTATTCCAGCCACTTTTGGGAAGTTCCAGAAACTACAAAAGTTGGAGTTAAGTAGGAACAAGTTGACAGGAGATATTCCAGATTTTATAGGCAACCTAACTCAGTTGTATTATTTGGGCATGGCAGAAAATATGTTTGAAGGAAAGATTCCTCCAAGTATAGGAAACTGTCAAAATTTGCAATACCTTAACCTTTGGAAAAACAACCTTGTAGGAAGCATACCCTTAGAGGTTTTTACTCTTTTCTCGTTAACAAACTTACTGGACTTGTCACAAAATTCACTGAGTGGCAGGCTTCCTGATGAAGTTGGCCGGTTAAAAAATATTGGGAAGATGAGTGTGGCCGAAAATAATCTGTCTGGTGAAATTCCTGAAACCATTGGAGACTGTATAAGCTTGGAGTACCTTTGTCTGCAAGGAAATTCCTTTCATGGAATCATACCTTCCTCTCTGGCTTCACTCAAAGGTCTTCGAGTATTAGACATGTCACGAAATCTTCTGAATGGATCAATTCCTAAGGATCTACAAAATATTTCTTTCTTAGAATACTTCAATGTATCTTTTAACATGTTGGAAGGTGAAGTACCACTGGAAGGTGTCTTTCAAAATGCAAGTGAGTTAGCCATGGCTGGGAACAATAATCTCTGTGGGGGTGTTTCACAGTTGCATCTACCACCGTGTCCTATCAAAGGTAAGAAACCTGCAAAGCACTTGAATTTTCTATGGATCACAATGGTGGTAGTTAGTGCAGTAGTTTTTCTTCTCATTCTGCCATTTTTTGTATCTATCTACCGGTTGAGGATAAGAAACCACAAAAATCCATCGTCTGATTTGCCAATTATAGACCCAGTGGATAAGGTTTCATACCAAAACCTACACCAAGGAACCGATGGGTTTTCAGTTAAAAATTTGATAGGATCTGGAAGTTTTGGCTCCGTATACAAAGGGACTATTGAGTTAGAAGGAGAAGAAAATGTTGTAGCCATAAAGGTTGTAAACCTTCAACAGAAGGGAGCTCAAAAGAGTTTCATTGCCGAATGTAATGCCTTGAAAAATATTAGGCATCGAAACTTGGTCAAGACTGTAACATGTTGTTCTAGCATAGATCACAGAGGCCAAGAATTCAAAGCTCTTGTTTTTGAGTACATGATAAATGGAAGCCTAGAAAGATGGTTGCATCCAGAAATAGAAACTTCAAAGCAGCCCGCTAGATCATTAAACATTGACCAAAGATTAAACATTATCATTGATGTTGCTTCTGCTATTCACTATCTTCACTACGAATGTGGGCAAGCCATTATTCACTGTGATTTGAAGCCAAACAATGTTCTTCTCGATGATTGTTTGGTAGCTCATGTAAGCGACTTTGGTTTAGCTAGAAGACTCACAACTATTGCAGTTTCTCCAAAACAAACTAGCACCATTGAAATAAAGGGCACAATTGGTTATGCTCCTCCAGAATATGGAATGGGATCAGAAGTGTCTGCAGAAGGCGACGTGTACAGCTTTGGAATTATTGTTTTGGAAATGTTGACAGGAAGAAGACCAATAGATGAAATGTTTGAAGATGGTCTTAATCTCCATAACTACGTCAAAATTTCAATTCCAAACCACCTTTCTCAGATTGTGGACCCAACTATTCTTCCAAATGATAGCCAAAATCTTCTTCCAATGCATCCTTCTGTAGAGAAATGCTTACTATCACTTTTTAGGATTGCACTTGCTTGTTCAAAGGAGTTGCCGAAAGAAAGAATGAGTATGGTTGATGTCATTAGGGAGCTTCATTTGATCAAAAGTTCATTTTCATCATGA 2982 0.3856 MNTFSVLFPSFCSVACLPMLVFFIINSLLCVPSTAASILGNQTDHLWPGVTCDSMNQRVIELNLEGKQLQGLIPPHIGNLSFLTRLNLGNNSFCGKIPQELGRLLQLQNLSLTNNSLKGEIPANLTRCSNLRELHLFGNNLIGEIPMEIGYLKKLQELTLAVNNLTGVIPSSIGNLSSLVSLSIGVNYFEGNIPQEICLLKNLSLMSLHVNKLIGTFPSCLYNMSSLTIISAADNQFNGSLPPNMFHTLPNLREFLVGGNHISGSIPTSIANSSVLQTLDVGTNHLEGQVPSLGKLQYLWFLSLYSNNLGDNTTKDLEFLKSLANCSKLEVVSISYNSFGGSLPNFMGNLSTKLSQLYLGGNHISGKIPAEIGNLVSLTILTMEINHFEGAIPATFGKFQKLQKLELSRNKLTGDIPDFIGNLTQLYYLGMAENMFEGKIPPSIGNCQNLQYLNLWKNNLVGSIPLEVFTLFSLTNLLDLSQNSLSGRLPDEVGRLKNIGKMSVAENNLSGEIPETIGDCISLEYLCLQGNSFHGIIPSSLASLKGLRVLDMSRNLLNGSIPKDLQNISFLEYFNVSFNMLEGEVPLEGVFQNASELAMAGNNNLCGGVSQLHLPPCPIKGKKPAKHLNFLWITMVVVSAVVFLLILPFFVSIYRLRIRNHKNPSSDLPIIDPVDKVSYQNLHQGTDGFSVKNLIGSGSFGSVYKGTIELEGEENVVAIKVVNLQQKGAQKSFIAECNALKNIRHRNLVKTVTCCSSIDHRGQEFKALVFEYMINGSLERWLHPEIETSKQPARSLNIDQRLNIIIDVASAIHYLHYECGQAIIHCDLKPNNVLLDDCLVAHVSDFGLARRLTTIAVSPKQTSTIEIKGTIGYAPPEYGMGSEVSAEGDVYSFGIIVLEMLTGRRPIDEMFEDGLNLHNYVKISIPNHLSQIVDPTILPNDSQNLLPMHPSVEKCLLSLFRIALACSKELPKERMSMVDVIRELHLIKSSFSS* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0930 993 Pfam Protein kinase domain 690 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0930 993 ProSiteProfiles Protein kinase domain profile. 689 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0930 993 Gene3D Ribonuclease Inhibitor 27 125 IPR032675 -
Vra11g0930 993 Gene3D Ribonuclease Inhibitor 236 321 IPR032675 -
Vra11g0930 993 Gene3D Transferase(Phosphotransferase) domain 1 773 992 - -
Vra11g0930 993 Gene3D Ribonuclease Inhibitor 322 618 IPR032675 -
Vra11g0930 993 SUPERFAMILY L domain-like 44 309 - -
Vra11g0930 993 SUPERFAMILY L domain-like 352 607 - -
Vra11g0930 993 Gene3D Phosphorylase Kinase; domain 1 670 772 - -
Vra11g0930 993 Pfam Leucine rich repeat 522 581 IPR001611 GO:0005515
Vra11g0930 993 SUPERFAMILY Protein kinase-like (PK-like) 661 986 IPR011009 -
Vra11g0930 993 PANTHER OS04G0122200 PROTEIN 47 992 - -
Vra11g0930 993 Gene3D Ribonuclease Inhibitor 126 235 IPR032675 -
Vra11g0930 993 ProSitePatterns Protein kinases ATP-binding region signature. 695 720 IPR017441 GO:0005524
Vra11g0930 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Vra11g0930 993 SMART serkin_6 689 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0930 993 SMART LRR_typ_2 399 423 IPR003591 -
Vra11g0930 993 SMART LRR_typ_2 544 567 IPR003591 -
Vra11g0930 993 SMART LRR_typ_2 152 175 IPR003591 -
Vra11g0930 993 SMART LRR_typ_2 471 496 IPR003591 -
Vra11g0930 993 SMART LRR_typ_2 375 398 IPR003591 -
Vra11g0930 993 SMART LRR_typ_2 104 128 IPR003591 -
Vra11g0930 993 SMART LRR_typ_2 249 273 IPR003591 -
Vra11g0930 993 SMART LRR_typ_2 224 248 IPR003591 -
Vra11g0930 993 PANTHER LRR RECEPTOR-LIKE KINASE 47 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0930 Vra-Chr11 8070305 8073465 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0930 47 991 Receptor kinase-like Gene Family AT3G47570 46.339 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vra11g0930 Pkinase 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0930 - - gmx:100786600 1586.24