Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0887 ATGGAGTTTGAGCCTTTGAGTCTAAGCAACGAGGTTATTGAATTTGATATGATTGGTTTGGGGTATGATGCTACCATTGACATGGAGCACCCTGTTGAGGATGGCGAGGACCTTGTTAATATTGATTATAGTCCTGCTGCTGCTAATTCTGTTCTTGCTGCTGGTGTGGGACCTCACATTTTTGGAGGGGACACTAATCTCGAGCCTTGTCAAGGTATGGACTTTGAATCGGAAGAGGCTGCAAAGGCCTTCTATAATTCCTACGCTCGCCGTGTTGGCTTTAGCACGCGGGTGAGCATGTCTCGGCGCTCCAGGCGTGACGGTTCTATAATTCAGAGGTCCTTTGTGTGTGCCAAGGAAGGTTTTCGTGTGGAGAAGGAGAAGCATTTGGTCGATGGCAGAGTCAAGCGGCCACGTGCCGAAACCCGCGTTGGTTGCAAGGCCATGTTGGTTGTGAAAATTCAAGATTCTGGCAGATGGGTTGTTTCTTCATTTGTCAAAGAACATAATCATGACTTGGTTCCGCCGGACAAGGTGCATTGCCTTCGTTCTCATCGTCATGTTTCGGGTCCAGCTAAGTCGTTGATTGATACTTTGCAGAGTGCTGGAATAGGACCTAGTGGAATAATGTCTGCTCTAATAAAAGAATACGGTGGAATTAGCAATATTGGTTTCACTGAGCGTGACTGTAGGAATTATATGAGAAGTAGTAGGCAAAGGACCCTTGGAGGTGACACTCAAATCCTTTTGGATTACTTGAAGAGCAAACAAGCAGAGAATCCTTCATTTTTCTTTGATGTACAAGGTGACGAAGATCACTGCATGAGTAATATCCTCTGGGTTGATCCCAAGGCTAGGACTAATTATACTTACTTCGGAGACACTGTCACCTTTGATACAACATATAGGTCTAACCGCTATAGATTACCTTTTGCACCTTTCACTGGCATAAATCATCATGGACAGCCTGTATTATTTGGTTGTGCTCTCCTGATAAATGAATCTGAGGCATCTTTTGTCTGGCTTTTCAAAACCTGGCTTGAAGCAATGTCAGATAGACCTCCAGTTTCAATTACTACTGATCATGATAGGGTGATATGTGCAGCCATCAACCATGTATTTCCCAGTACCCGTCACCGATTTTGTAAGTGGCACATTTTTAAGGAGTGCCAAGAGAAGTTGTCTCATATGCTTTCTGAACATCATAATTTTGAAGTTGACCTGCATAAATGCATTAACCTGACCGAGTCCATTGAGGAGTTTGAGTCTTGTTGGTCCTGTCTAATTGATAGGTATGATCTCACGAAACATGAATGGCTTCAAGCAATTTACAATGATAGGCGGCAGTGGGTACCAGTGTACTTGAGGGATACATTTTTTGCAGAAATGTCAATAACACAGCGAAGTGATAGCATAAACTCTTATTTTGATGGATATATCAATGCATCAACAACACTTCAGCTTTTTGTCAAGCAGTATGAGAAGGCTTTGGAGAGCCGTTTTGAAAAAGAAGTCAAAGCTGACTATGATACTATTAACTCTACTCCAATTCTGAAGACTCCATCACCTATGGAGAAACAGGCAGCGGGAGTTTACACAAGGAGGTTGTTTATCAAATTTCAAGAAGAATTGGTTGAGACATTAACATTCTTGGCAAACAAAGTAGACGAAGAAGAAATGATTACCGTGTACAGAGTCGCCAAATATGGCGAAATGCACCGAGCTTACTTTGTCAACTTTAATTCATTTGAGATGAAAGCTACTTGTAGCTGCCAGATGTTTGAGTTTTCTGGTCTAGTTTGTAGACATATATTGACTGTTTTTAGGGTGACAAACCTTCTTACTTTACCATCGCATTATATTTTAAAAAGATGGACCAGGATTGCTAAAAGTGGTGTCATTTTGGATGAACGTACTGCTAATTTGTCAAATGGTTCTCACGAATCTCTAACCATCCGATTCAGCAATCTCCGTCACCAGGCCCTTAAATATGTTGAAGAGGGAGTAACCTCTTCGGAAGTTTATGATGTAGCAATAAGTGCACTTCGGGAGGCTGCGAGAAAGGTGGCATCTGCAACAAAAAAGGATGGAAGACAGGTTATTGTAAACGGAACTTCCGAAGAATACCTTCATCAGAGCAATGAAACAACTATAAGACGCAGTGATCCTCCATTTTGCTCGCAACAATCTTCATATAAGGATGACCAGGATAGAACAATTGAGAAGTTGACACGGCAACTAGACCGAGCTCGAAGGAAATGTGAAGTTTACAGGTCCAACTTGCTGTCAATTTTAAAAGACATTGAAGAGCAGAAGCTACAATTATCAGTTAAAGTCCAAAATGTTAAGTTGGGAATGAAAGAGTGA 2367 0.4178 MEFEPLSLSNEVIEFDMIGLGYDATIDMEHPVEDGEDLVNIDYSPAAANSVLAAGVGPHIFGGDTNLEPCQGMDFESEEAAKAFYNSYARRVGFSTRVSMSRRSRRDGSIIQRSFVCAKEGFRVEKEKHLVDGRVKRPRAETRVGCKAMLVVKIQDSGRWVVSSFVKEHNHDLVPPDKVHCLRSHRHVSGPAKSLIDTLQSAGIGPSGIMSALIKEYGGISNIGFTERDCRNYMRSSRQRTLGGDTQILLDYLKSKQAENPSFFFDVQGDEDHCMSNILWVDPKARTNYTYFGDTVTFDTTYRSNRYRLPFAPFTGINHHGQPVLFGCALLINESEASFVWLFKTWLEAMSDRPPVSITTDHDRVICAAINHVFPSTRHRFCKWHIFKECQEKLSHMLSEHHNFEVDLHKCINLTESIEEFESCWSCLIDRYDLTKHEWLQAIYNDRRQWVPVYLRDTFFAEMSITQRSDSINSYFDGYINASTTLQLFVKQYEKALESRFEKEVKADYDTINSTPILKTPSPMEKQAAGVYTRRLFIKFQEELVETLTFLANKVDEEEMITVYRVAKYGEMHRAYFVNFNSFEMKATCSCQMFEFSGLVCRHILTVFRVTNLLTLPSHYILKRWTRIAKSGVILDERTANLSNGSHESLTIRFSNLRHQALKYVEEGVTSSEVYDVAISALREAARKVASATKKDGRQVIVNGTSEEYLHQSNETTIRRSDPPFCSQQSSYKDDQDRTIEKLTRQLDRARRKCEVYRSNLLSILKDIEEQKLQLSVKVQNVKLGMKE* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0887 788 ProSiteProfiles Zinc finger SWIM-type profile. 576 612 IPR007527 GO:0008270
Vra11g0887 788 MobiDBLite consensus disorder prediction 714 733 - -
Vra11g0887 788 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 43 762 - -
Vra11g0887 788 Coils Coil 733 760 - -
Vra11g0887 788 Pfam MULE transposase domain 296 388 IPR018289 -
Vra11g0887 788 SMART 26again6 587 614 IPR006564 GO:0008270
Vra11g0887 788 Pfam SWIM zinc finger 584 610 IPR007527 GO:0008270
Vra11g0887 788 Pfam FAR1 DNA-binding domain 84 175 IPR004330 -
Vra11g0887 788 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 43 762 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0887 Vra-Chr11 7605696 7610424 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra11g0887 MULE 1e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0887 - - gmx:100782414 1403.27