Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0885 ATGAGTGATGCAAAAGAACACGAAGAGGCTGCCCAGGGCGAGCCCTCGGTCGTGGAAGAGAACAAGGTGTTGGTTGATACAAAGGATCGAGTTCAGCCTGAAGATGCCTCTGCTGCTGTTCCCGAAGAGGAAGCGTCAAACCTTGTTGAAAATGGGTCAAATCATGTTGAAAGTGAGTCAAATCCTGCTGAAAATAAGAAGGAAGAGCCTTCCGCTGCCGAGCATAAAAATGTGGAACCTGAGGTTGTTTCAGAAGGAATTCCACAAGAGGATGTCCAAAATACTCTTCACTCTGTCCCATTAGAGGCTCATACTCAGGTTTTGGAGACGACTGAATGTGAAGAAGCGTCTAAAGCGAAGGGGGAAGCTGAAAATTTTCCCACAAGTGATAAGAAGGTTGAGAATAGTGATGATATTCGTCAGAATAGTATTCATGATGTTGGAATGGCTGTGGAAGTGAAGCCTGAAGGCTGTGGAGTGATTGACAGTAAAACTTCCGACAATGGTGATCCAATGCCTGCAAGTCATAATGAGCCTGCTATATCACAATCTGCTCCTGCTGATACAAACGCTGAATTTGTGAATGTATTAGAAGTTGAGAATAAGGCTGATGAAAAGCAAGCTATCGATCCTGCTGATAATGGGAATTCAAACTCAAAGCACTTGTCTTTCTTGGATGCTGACCATTCCTATGATGGTAATGAGTCAGGAACCGAGGAGGAGCAGTCAGCATTCACGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACATCCCAAGTTTTATGGAGAAGGACTAAATTGCCTCAAGTTGTGGAGAGCTGTAACGAGATTGGGTGGCTATGATAAGGTGACTTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACCACCGTCTCATGGACTTTCCGGGGATTTTATGAGAAGGCACTTCTTGATTACGAAAGACATAAAATAAAAGGTGGTGAGCTAAATGTGCCGATTTCTTCTCACCCAGAGCCAATAAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCGCAACGTCTCCTAGGGAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCCATGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTGCACAAACGTAAAAAGCCATCTTCACCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCTTCTAAACCCCAATTGGACACAACTGTGATTGATATAGGACCTCCTGCTGACTGGGTAAAAGTCAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTCTTCGGGAAGAGGTTCATGTACAGTCAGACCCAGCAGGACGCCTAGTCATAAGTGGTGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAGAAAGGTCGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACATCGGCAGTGGTGACGCTGCATGGGCAGTTGTTTGTTCGTGTACCATTTGAACAATCCGAATAG 1608 0.4484 MSDAKEHEEAAQGEPSVVEENKVLVDTKDRVQPEDASAAVPEEEASNLVENGSNHVESESNPAENKKEEPSAAEHKNVEPEVVSEGIPQEDVQNTLHSVPLEAHTQVLETTECEEASKAKGEAENFPTSDKKVENSDDIRQNSIHDVGMAVEVKPEGCGVIDSKTSDNGDPMPASHNEPAISQSAPADTNAEFVNVLEVENKADEKQAIDPADNGNSNSKHLSFLDADHSYDGNESGTEEEQSAFTKELENFFRERSMEFKHPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPISSHPEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSMSVQKREKQLKSINLHKRKKPSSPYMDNAVKAARSKPSKPQLDTTVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVHVQSDPAGRLVISGEPEHPNNPWGVTPFRKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0885 535 MobiDBLite consensus disorder prediction 60 81 - -
Vra11g0885 535 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 17 534 IPR045147 GO:0006357
Vra11g0885 535 MobiDBLite consensus disorder prediction 111 141 - -
Vra11g0885 535 CDD ACD_sHsps-like 450 530 - -
Vra11g0885 535 Gene3D - 239 336 IPR036431 GO:0003677
Vra11g0885 535 Pfam Hsp20/alpha crystallin family 452 534 IPR002068 -
Vra11g0885 535 SMART ARID_2 236 326 - -
Vra11g0885 535 MobiDBLite consensus disorder prediction 1 37 - -
Vra11g0885 535 SMART bright_3 240 331 IPR001606 GO:0003677
Vra11g0885 535 MobiDBLite consensus disorder prediction 111 149 - -
Vra11g0885 535 MobiDBLite consensus disorder prediction 205 245 - -
Vra11g0885 535 MobiDBLite consensus disorder prediction 225 245 - -
Vra11g0885 535 CDD ARID 241 326 - -
Vra11g0885 535 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 435 535 IPR002068 -
Vra11g0885 535 MobiDBLite consensus disorder prediction 165 185 - -
Vra11g0885 535 MobiDBLite consensus disorder prediction 168 185 - -
Vra11g0885 535 Gene3D - 437 535 IPR008978 -
Vra11g0885 535 MobiDBLite consensus disorder prediction 1 85 - -
Vra11g0885 535 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 17 534 - -
Vra11g0885 535 SUPERFAMILY HSP20-like chaperones 444 531 IPR008978 -
Vra11g0885 535 SUPERFAMILY ARID-like 234 342 IPR036431 GO:0003677
Vra11g0885 535 ProSiteProfiles ARID domain profile. 239 330 IPR001606 GO:0003677
Vra11g0885 535 Pfam ARID/BRIGHT DNA binding domain 242 326 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0885 Vra-Chr11 7574409 7581524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0885 234 533 ARID Transcription Factor Family AT1G76510 64.262 1.68e-129 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vra11g0885 HSP20 3e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0885 - - gmx:100791081 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0885 11 7574409 7581524 Vra11g0885 11 7574409 7581524 ECH
Vra11g0885 11 7574409 7581524 Vra7g0235 7 3609531 3616076 PCT