Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0876 ATGACGCGCATGCTCAGAATTCTCAAATCTGCCGACAACGCCACGCCGGTGGCAGCGGCGGCTCCGCCGCCGGAGGCGGTGGCCCTGGAGTCCGATTTCGTGGTGATTCTGGCGGCTCTTCTCTGCGCTTTAATTTGCGTGGTGGGACTAGTAGCTGTGGCGCGGTGCGCGTGGCTACGGCGAGGGCCGGGCGGAGGAAACTCGCCGCGGCAAGCGGTGGTGAACAAGGGCTTAAAGAAGAAGGTGCTGCAGTCGCTGCCGAGGTTCGCGTACGTGGACAGCAACCCGAGCAAGTGGGTGGCCACGTCGGAATGCGCGATTTGCCTGGGTGATTTCACCCCCGGCGACGAGATTCGTGTTCTTCCGCAGTGCGGCCACGGCTTCCACGTGTCCTGCATCGACAGGTGGCTGGGGTCCCACTCCTCCTGCCCTTCCTGCCGCCAGGTCCTCGCCGTCGCCAGGTGTCAGAAGTGCGGCCGCTTTCCGGCCACCGCCTCAAGAAGCGGCGCCAGCGAGCCCGAATTGAAGTCCAGAGAAGACAGCAATGCTGCTTCGATAAGTAATTGCAGTAATAACAACGGTGATGGCGGTGGAAGTGGTAATAACGCGAATCATCATCACCATAGCCACCACTCTGACAGTGGGTTCTTGCCGTGA 657 0.6149 MTRMLRILKSADNATPVAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGPGGGNSPRQAVVNKGLKKKVLQSLPRFAYVDSNPSKWVATSECAICLGDFTPGDEIRVLPQCGHGFHVSCIDRWLGSHSSCPSCRQVLAVARCQKCGRFPATASRSGASEPELKSREDSNAASISNCSNNNGDGGGSGNNANHHHHSHHSDSGFLP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0876 218 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 191 - -
Vra11g0876 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Vra11g0876 218 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 191 - -
Vra11g0876 218 CDD RING-H2_PA-TM-RING 104 147 - -
Vra11g0876 218 MobiDBLite consensus disorder prediction 163 218 - -
Vra11g0876 218 Pfam Ring finger domain 104 147 IPR001841 -
Vra11g0876 218 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Vra11g0876 218 SUPERFAMILY RING/U-box 84 152 - -
Vra11g0876 218 SMART ring_2 105 146 IPR001841 -
Vra11g0876 218 MobiDBLite consensus disorder prediction 180 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0876 Vra-Chr11 7408046 7409028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0876 1 180 C3H Transcription Factor Family AT1G76410 56.150 2.47e-61 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0876 - - vun:114170353 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0876 11 7408046 7409028 Vra11g0876 11 7408046 7409028 ECH
Vra11g0876 11 7408046 7409028 Vra7g0229 7 3494105 3495004 PCT