Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra11g0876 | ATGACGCGCATGCTCAGAATTCTCAAATCTGCCGACAACGCCACGCCGGTGGCAGCGGCGGCTCCGCCGCCGGAGGCGGTGGCCCTGGAGTCCGATTTCGTGGTGATTCTGGCGGCTCTTCTCTGCGCTTTAATTTGCGTGGTGGGACTAGTAGCTGTGGCGCGGTGCGCGTGGCTACGGCGAGGGCCGGGCGGAGGAAACTCGCCGCGGCAAGCGGTGGTGAACAAGGGCTTAAAGAAGAAGGTGCTGCAGTCGCTGCCGAGGTTCGCGTACGTGGACAGCAACCCGAGCAAGTGGGTGGCCACGTCGGAATGCGCGATTTGCCTGGGTGATTTCACCCCCGGCGACGAGATTCGTGTTCTTCCGCAGTGCGGCCACGGCTTCCACGTGTCCTGCATCGACAGGTGGCTGGGGTCCCACTCCTCCTGCCCTTCCTGCCGCCAGGTCCTCGCCGTCGCCAGGTGTCAGAAGTGCGGCCGCTTTCCGGCCACCGCCTCAAGAAGCGGCGCCAGCGAGCCCGAATTGAAGTCCAGAGAAGACAGCAATGCTGCTTCGATAAGTAATTGCAGTAATAACAACGGTGATGGCGGTGGAAGTGGTAATAACGCGAATCATCATCACCATAGCCACCACTCTGACAGTGGGTTCTTGCCGTGA | 657 | 0.6149 | MTRMLRILKSADNATPVAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGPGGGNSPRQAVVNKGLKKKVLQSLPRFAYVDSNPSKWVATSECAICLGDFTPGDEIRVLPQCGHGFHVSCIDRWLGSHSSCPSCRQVLAVARCQKCGRFPATASRSGASEPELKSREDSNAASISNCSNNNGDGGGSGNNANHHHHSHHSDSGFLP* | 219 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra11g0876 | 218 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 1 | 191 | - | - | |
Vra11g0876 | 218 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 152 | IPR013083 | - | |
Vra11g0876 | 218 | PANTHER | ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN | 1 | 191 | - | - | |
Vra11g0876 | 218 | CDD | RING-H2_PA-TM-RING | 104 | 147 | - | - | |
Vra11g0876 | 218 | MobiDBLite | consensus disorder prediction | 163 | 218 | - | - | |
Vra11g0876 | 218 | Pfam | Ring finger domain | 104 | 147 | IPR001841 | - | |
Vra11g0876 | 218 | ProSiteProfiles | Zinc finger RING-type profile. | 105 | 147 | IPR001841 | - | |
Vra11g0876 | 218 | SUPERFAMILY | RING/U-box | 84 | 152 | - | - | |
Vra11g0876 | 218 | SMART | ring_2 | 105 | 146 | IPR001841 | - | |
Vra11g0876 | 218 | MobiDBLite | consensus disorder prediction | 180 | 203 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra11g0876 | Vra-Chr11 | 7408046 | 7409028 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra11g0876 | 1 | 180 | C3H Transcription Factor Family | AT1G76410 | 56.150 | 2.47e-61 | 188 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra11g0876 | - | - | vun:114170353 | 342.428 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vra11g0876 | 11 | 7408046 | 7409028 | Vra11g0876 | 11 | 7408046 | 7409028 | ECH | |
Vra11g0876 | 11 | 7408046 | 7409028 | Vra7g0229 | 7 | 3494105 | 3495004 | PCT |