Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0872 ATGATTGCTTCCGTTCTAAGCTCTCCGTTTTCCCTATTTCTTCTCATTTTTCTCTTCTTCAGCTTTCCCACCTCACAATCCCAACTCTTGCTGCCTTCTTCTCCGCCCTCAGTTAAACCGGCCACCGCACTCGTCGCCGCCCTGGATGGTACCGTGTATTTGTTGGATAGTGATTCTGGAAGGGTTTTTTGGTCTTTTTCAACTGGATCTCCAATCTACTATTCATATCATGCTCCCATCAATAACCCTAACCACAACTTCACCGCCTTCGTTGAATGTGGAGATGATTGGGAATTAATCGTCCACGACGCTCACTTGGGTAAAAAGAGACTATCGAAATCGATTGAAGAGTATGTTGCTTCTACCCCTATCAAGACAAAGGATGGAGCATCTGTATTTGGTCACAAGAGAACCACTATGTATGTAGTTAATGCTAAAACTGGAGGACTATACCGAAGCTACTCTGAACATGATCATGCTTCTAATGCGGTGTCGAGTTATGATGACCGGCTGCATGTTGCAAGTACGAAGGATAATGTTCTTGTTGATCCTGCACAGTTGAATCCACCTGAGTACTTGCTTGAGATAACTAGGACGGATTATACTTTGCAATCCGTTGTTCCTGGTTCTGGAATAGTTTTGTGGACTATGAAAGTGGCTGAATTTAAGGCTGCATTGGTTTGTTCGCATACTGAAAATCCTTCTGGAAGGAAATCGTTAGATGCAGATGATGGGTATGTTTTGGACGGTGGCTTAGATTTTGCCATGCCCTATGCATGTTGGGACATGAAACTGAATGAAGTATACCGCCAACGCAAGAAATTTTTGATAGAACCTGCTGACCCTGAGAGATTGTCTGAGGTTTATGAAGAGGTTGATATGCTTCCATTTCATACTTCAGAGCTCATGCTTCCATCACAACCAGCCAATGATAAAATTGTTCTAGGCCGGGAGGGAATGCCGATGCTATCTTTGCCAATGCCAAATCCTTTGTCTTCTTTGCAAAACAAAATTGGCTTCTATGAGGGCAATGATAATGTTCCTATGCTCCCTCGGTCTCTTATGGAGACCACTACAGAAGAAGTTGATCCAGGCAGGGTAAATAAATGGTCAAAAACAATACCTCTTGTATTATTTACCATCTTTCTAGGTTCTTTTATTATATATCACTCTCTTGTCTTTACCAATAAAGACCAGAACAGGGAGACACATTCAAAAAGTCCACCTCCTAAGAAGAAGAAAGCTCGCAAGTCAATAAAGAACAACATTTCTGTCACACAGAATAAGCAATCGTTGTTGGCGCAGGAGGAGGGCACATTCACACTTAACGAAACAAACTCCAGTACACAGGTGCAACTTGATGGACGCAGGATCGGTAAACTATTTGTATCTAATAAAGAAATTGCCAAGGGAAGCAATGGTACTGTTGTCCTTGAGGGGACATACGAAGGTCGGACAGTTGCTGTCAAACGTCTTGTTCAGAGTCATCATGATGTGGCCCATAAAGAAATCCAAAATCTCATTGCATCTGACAGGCATCCAAACATTGTCCGATGGTATGGGGTGGAATGCGATCATGATTTTGTTTACCTTGCTCTGGAACGNTGTACATGCAACTTGGACGATTTGATTCATTCGCACTCTGATATATCAGAAAACCCNGCAGTTAGAACTTCTCAAATGAAGACAGAGGAGACTGATATGCACTTTCTTTGGAAAACAAATGGTTTTCCATCACCTCTCTTACTGAAATTGATGAGGGATATAGTTTCTGGGCTTGTTCATTTGCATGAACTAGGGATAATCCATCGGGATTTGAAACCTCAAAATGTTTTGATAATAAAAGAAAGATTATTGGTTGCAAAGCTTTCTGACATGGGAATTAGCAAACGTCTTCTCGAAGATATGTCTTCTCTAGGCGAGAGTGTTACGGGCTGTGGCAGTTCAGGCTGGCAAGCACCTGAGCAACTTGTTCAAGGGCGACAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGTGTTCTCTTTTTCTGCATGACTGCAGGAAGGCATCCATTTGGAGAGCGGCTTGAGCGTGATGTCAATATTGTTAAAAATCAAAAAGATCTTTTCTTAGTGGAGTTTATTCCTGAAGCTGAGGATCTTATTTCTTGTTTGTTAAACCCTAATCCTGATCTTAGGCCAATGGCGATTGAAGTATTGCATCATCCTCTCTTTTGGAGCTCTGAGATGAGACTTTCATTTTTGCGTGATGTAAGTGATAGGGTGGAACTTGAAGATAGAGAATCCGTTTCTGATCTTTTGAAGTCATTAGAAAGCATTGCTCCACTGGCTTTAGGTGCAAAATGGGATGAGAAGCTAGATCCTGAGTTCATCACTAACATTGGTCGATACAGGAGATATAAATTTGACAGTGTGCGGGACTTGTTGAGGGTCATGAGAAATAAGCTAAACCATTACAGGGAAATGCCTCAAGAAATCCAGGAACTGATAGGACCTGTTCCGGATGGATTCAATGACTACTTTGCAAGTCGATTCCCAAGGCTCTTGATTGAAGTGTACAATGTTATATACAGAAATTGCAAGAACGATGAATGCTTTCAAAGATATTTTAGATACATTAACTAG 2628 0.4151 MIASVLSSPFSLFLLIFLFFSFPTSQSQLLLPSSPPSVKPATALVAALDGTVYLLDSDSGRVFWSFSTGSPIYYSYHAPINNPNHNFTAFVECGDDWELIVHDAHLGKKRLSKSIEEYVASTPIKTKDGASVFGHKRTTMYVVNAKTGGLYRSYSEHDHASNAVSSYDDRLHVASTKDNVLVDPAQLNPPEYLLEITRTDYTLQSVVPGSGIVLWTMKVAEFKAALVCSHTENPSGRKSLDADDGYVLDGGLDFAMPYACWDMKLNEVYRQRKKFLIEPADPERLSEVYEEVDMLPFHTSELMLPSQPANDKIVLGREGMPMLSLPMPNPLSSLQNKIGFYEGNDNVPMLPRSLMETTTEEVDPGRVNKWSKTIPLVLFTIFLGSFIIYHSLVFTNKDQNRETHSKSPPPKKKKARKSIKNNISVTQNKQSLLAQEEGTFTLNETNSSTQVQLDGRRIGKLFVSNKEIAKGSNGTVVLEGTYEGRTVAVKRLVQSHHDVAHKEIQNLIASDRHPNIVRWYGVECDHDFVYLALERCTCNLDDLIHSHSDISENPAVRTSQMKTEETDMHFLWKTNGFPSPLLLKLMRDIVSGLVHLHELGIIHRDLKPQNVLIIKERLLVAKLSDMGISKRLLEDMSSLGESVTGCGSSGWQAPEQLVQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDVNIVKNQKDLFLVEFIPEAEDLISCLLNPNPDLRPMAIEVLHHPLFWSSEMRLSFLRDVSDRVELEDRESVSDLLKSLESIAPLALGAKWDEKLDPEFITNIGRYRRYKFDSVRDLLRVMRNKLNHYREMPQEIQELIGPVPDGFNDYFASRFPRLLIEVYNVIYRNCKNDECFQRYFRYIN* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0872 875 SMART serkin_6 462 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0872 875 Pfam Protein kinase domain 464 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0872 875 Gene3D KEN domain 742 874 IPR038357 -
Vra11g0872 875 MobiDBLite consensus disorder prediction 399 419 - -
Vra11g0872 875 Gene3D - 20 279 IPR015943 GO:0005515
Vra11g0872 875 PANTHER IRE1-RELATED 30 871 IPR045133 GO:0004521|GO:0004674|GO:0030968
Vra11g0872 875 Pfam Ribonuclease 2-5A 745 871 IPR010513 GO:0004540|GO:0006397
Vra11g0872 875 SUPERFAMILY Protein kinase-like (PK-like) 455 759 IPR011009 -
Vra11g0872 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672|GO:0006468
Vra11g0872 875 SMART ire1_9 123 155 IPR018391 -
Vra11g0872 875 SMART ire1_9 36 67 IPR018391 -
Vra11g0872 875 Gene3D Phosphorylase Kinase; domain 1 447 534 - -
Vra11g0872 875 ProSiteProfiles Protein kinase domain profile. 462 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0872 875 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 33 186 IPR011047 -
Vra11g0872 875 ProSiteProfiles KEN domain profile. 742 873 IPR010513 GO:0004540|GO:0006397
Vra11g0872 875 Gene3D Transferase(Phosphotransferase) domain 1 562 741 - -
Vra11g0872 875 CDD RNase_Ire1 743 871 - -
Vra11g0872 875 SMART PGNneu 804 858 - -
Vra11g0872 875 PANTHER SERINE/THREONINE KINASE DOMAIN PROTEIN 30 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0872 Vra-Chr11 7354406 7361089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0872 388 812 MAP Kinase Kinase Kinase AT1G54960 25.112 3.97e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Vra11g0872 Pkinase 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0872 K08852 - gmx:100785363 1283.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0872 11 7354406 7361089 Vra11g0872 11 7354406 7361089 ECH
Vra11g0872 11 7354406 7361089 Vra7g0224 7 3349754 3405526 PCT