Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0871 ATGAGTAAAGTTTGGCCCTTGGTTTTCATGGTTCTCTCCATTGGATGCTTTTCAAATGGGAGTGGCAGGCAAAATTCCACAGTACCGGATCTTGTAAATATTGGGGCTCTCTTCTCTTACAATACCAGTGTTGGTAGAACTATAAAAGTTGCATTAGAAGCTGCGTTTGACGATATAAATTCTGATCCAAACATTCTTGGTAGAACCAAGCTAAACCTCTCACTGCAAGAAGATTCTAAGTACAGAGGTTTCCTGAGCATTGCCGAGGTTTTGCAGGTCATGGCAAGTCAGACAGTGGCGATAATAGGCCCCCATAGTTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTCCAAGTTCCTCTTCTGTCATTTTCAGCTTTAGACCCTACTCTTTCTTCGCTTCAATTCCCATTCTTCATTAGAACTTGCCATAGTGATCTTTATCAAATGACTGCAATAGCAGACCTTGTTGACTACTATGGCTGGAAAGATGTTATCGCTGTCTTTCCTGATGATGATAATGGGAGAAATGGAATTAGCACATTAGGAGATAAGCTTGCGGAGAGGCGTTGCAAGATATCATATAAAGCAGCTTTGAGGCCCCAAGCATCTATGGAAGAGATTAGTAATGTGCTTGTGCAGGTGGCTCTGGCAGAATCACGGATAATAGTTGTTCATGGCAATACTCAACTTGGCCCCCAGGTGTTCACAGTTGCAAAGAATCTTGGGATGATGGGAACTGGTTATGTCTGGATAGCCACTTCTTTTCTCTCTGCTCTGCTTGATATTAACTATCCTCTCTCTCCTGATTCAATGGATGAAATTCAAGGAGTTCTTACACCACGTATCCACACGCTAAATTCAGAGCGCAGAAGAAGTTTTGTTTCTAGGTGGAAAAACTTGACCAGGGGAAATACTGCCAATGTCAAGCTTGGATTGAGTTTTTTACCTATCTATGCATATGACACTGTTTATGCACTTGCTTATGCTCTTGATGCATTTTTCAAAGAAGGTAACCGAATTACATTCTCAACTGATTCAAAGCTGTCTAACATACATGGAAACAACTTGAACCTTGAGGCCTTGAAAATCTTTAATGAAGGAAATCTGTTACGAAGAAAGATCTATGAGGTAAACATGACTGGTGTATCAGGTCCATTCAAGTATACATCCGATAGAAACCTTGCTAATCCTGCATATGAAATCATTAATGTGATTGGAACAGGAACTCGAAGGATCGGTTATTGGTCTAATCACTCTGGTTTATCAGTTGTTCCTCCAGAAACTCTTTATTCCAAACCAGTGAATCTGCCCAGGAAAAATCAAAAGCTGTTTCCTGTGATTTGGCCTGGAAACACAGACGAGAAACCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGCTTTTAAAGATTGGAGTACCAAGAGGTGTTAGTTACCACGAGTTTGTATCACAGATAAAAGGCACTGACATGTTTGAGGGATTCTGCATTGATGTATTTCTTGCTGCAGTGAATCTCTTGCCTTATGCTGTCCCCTACAAGTTCATCTCATACGGGGATGGTAAGAACAATCCTAGTATGACTGAGCTTGTCCGTCTGATCACAACGGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTAGTAGCACCCATTGGGCAGGCAGAATCCAATGCTTTGGCCTTTTTGGCCCCTTTTACACCAAAGATGTGGTTTGTAACAGCTTCCTTTTTCATACTAGTAGGAGCTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCCAAAAAACAAGTAGTTACCGTTTTATGGTTTAGTTTTTCAACAATGTTCTTTTCCCACAGGGAAAATACAGTGAGTACACTTGGTCGTGTTGTGTTGATTATATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTATACGGCAAGTCTGACCTCAATCCTCACAGTGCAACAACTTTATTCTCCCATTAAAGGCATTGAAAGTCTAGTAAACAGCAAAGTGCCTATAGGCTACACGCAGGGTTCTTTTGCAAAAAACTACTTAGTTCAGGAAATTCATATTGAGGAGTCCAGGCTAGTTCCTCTTACAACACCAGAAGAAATTGCTAAAGCACTGAAACATGGTCCTGAAAATGGCGGTGTTGCTGCTTACATTGATGAGCGTGCCTACACTGATATCTTCCTCTCCAGCCGTTGCGATTTAAGTGTCGTAGGTCAGGAGTTCACCAGAAATGGTTGGGGATTTGCCTTCCCACGGGACTCGCCATTAGCAGTTGACCTGTCAACTGCCATATTACAAATGATAGATAATGGAGATTTGCAAAGGATCCATGACAAATGGCTTTTGAGTAGTGCTTGCTTATCACAAGGGTCAAAGCTTGAAGTGGAAAGACTCCAACTTAAAAGCTTTTGGGGGCTCTATGCGATCTGTGGAATTGCGTGCTTGCTTGCACTCTTCATGTATCTTATACAGATTTTGAGGCAATACCAGAAGCACTACTTAGAGGAACCTGAGTCCATTGGTGGCCAAAGCATAGGATCATCATCAAGATCTTCACGTCTCAAGACTTTCCTTTCATTTGCAGATGAGAAAGAAGAGACTGTGAAGAGCCGGTCCAAGAGAAGGAAAATGGAGAGGATCTCATACCGAAGCTCTGTAGGAAGCTCATCGAATAAGGAAGATGCTTCACGCAGAAGTGAATATGCTAATGAACTATTATGA 2814 0.4147 MSKVWPLVFMVLSIGCFSNGSGRQNSTVPDLVNIGALFSYNTSVGRTIKVALEAAFDDINSDPNILGRTKLNLSLQEDSKYRGFLSIAEVLQVMASQTVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLYQMTAIADLVDYYGWKDVIAVFPDDDNGRNGISTLGDKLAERRCKISYKAALRPQASMEEISNVLVQVALAESRIIVVHGNTQLGPQVFTVAKNLGMMGTGYVWIATSFLSALLDINYPLSPDSMDEIQGVLTPRIHTLNSERRRSFVSRWKNLTRGNTANVKLGLSFLPIYAYDTVYALAYALDAFFKEGNRITFSTDSKLSNIHGNNLNLEALKIFNEGNLLRRKIYEVNMTGVSGPFKYTSDRNLANPAYEIINVIGTGTRRIGYWSNHSGLSVVPPETLYSKPVNLPRKNQKLFPVIWPGNTDEKPRGWVFPNNGRLLKIGVPRGVSYHEFVSQIKGTDMFEGFCIDVFLAAVNLLPYAVPYKFISYGDGKNNPSMTELVRLITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPIGQAESNALAFLAPFTPKMWFVTASFFILVGAVVWILEHRVNDEFRGPPKKQVVTVLWFSFSTMFFSHRENTVSTLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLYSPIKGIESLVNSKVPIGYTQGSFAKNYLVQEIHIEESRLVPLTTPEEIAKALKHGPENGGVAAYIDERAYTDIFLSSRCDLSVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMIDNGDLQRIHDKWLLSSACLSQGSKLEVERLQLKSFWGLYAICGIACLLALFMYLIQILRQYQKHYLEEPESIGGQSIGSSSRSSRLKTFLSFADEKEETVKSRSKRRKMERISYRSSVGSSSNKEDASRRSEYANELL* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0871 937 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Vra11g0871 937 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vra11g0871 937 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 929 - -
Vra11g0871 937 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Vra11g0871 937 MobiDBLite consensus disorder prediction 893 937 - -
Vra11g0871 937 Pfam Bacterial extracellular solute-binding proteins, family 3 495 812 IPR001638 -
Vra11g0871 937 SUPERFAMILY Periplasmic binding protein-like I 28 464 IPR028082 -
Vra11g0871 937 Gene3D - 148 425 - -
Vra11g0871 937 PANTHER GLUTAMATE RECEPTOR 3.6 11 929 - -
Vra11g0871 937 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Vra11g0871 937 CDD GluR_Plant 472 812 - -
Vra11g0871 937 Gene3D - 467 583 - -
Vra11g0871 937 Gene3D - 584 717 - -
Vra11g0871 937 SUPERFAMILY Periplasmic binding protein-like II 448 814 - -
Vra11g0871 937 PIRSF IGluLR_plant 1 935 IPR017103 -
Vra11g0871 937 Gene3D - 50 400 - -
Vra11g0871 937 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Vra11g0871 937 Gene3D - 760 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0871 Vra-Chr11 7349029 7354185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0871 5 916 Ion Channels AT3G51480 56.846 0.0 1095
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0871 K05387 - gmx:100793320 1580.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0871 11 7349029 7354185 Vra7g0223 7 3343995 3349143 PCT