Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0870 ATGTGTGAGGCAGATACAATGAGTGGTGTTGGTGGTGGATGCCCCTGCCCCAGGGGTAACAGTGATGGTGCCATGGAGGATCTGAATGGGGATACGGTGGGGAATTTGAATCAGAATGCCGCGAAGCCTCCGAGGGATCATTCTGTTATGCGACATTTCAGCAGCTCTTCTTGGTCTGCAGAGCCGGAATCAAATATTAATATTATTGGACTTAAATCAAGCACAGAAAAAAAATCAGACTTTCCACTTGAAATTCGATCTGGAAGCTATTCCGATAAAGGACCAAAGCAGTACATGGAGGATGAATTCATATGCATTGATACTCTTAGTGAATGTGACGGTCTAGGAGCAAACCTTCCTTCTCCTGCAGCATTTTATGGGGTATTTGATGGACATGGTGGCGTTGATGCAGCAGCATTCACGAGAAAGAACATCCTCAAGTTTATAGTTAAAGATGCTCATTTCCCATCTAGCATTAAGAAAGCAATTAAGAGTGCATTTGTGAAGGCTGATCTTGCTTTTAGAGATGCCAGTTCTCTTGACAACTCTTCAGGCACCACCGCTCTGATAGCCCTTATGTTGGGAAGTTCCATGCTGATTGCCAATGCAGGAGATTCTCGTGCTGTGTTGGGCAAACGGGGCAGAGCAGTCGAACTTTCCAAAGACCATAAACCAAATTGCACTTCTGAAAGATTAAGAATTGAAAAACTTGGTGGAGTCATCTACGATGGATACCTCAACGGCCAACTATCAGTGGCTCGTGCTCTTGGAGATTGGCACATAAAAGGCAGCAAAGGTTCTAAGAGTCCTCTAAGCTCAGAGCCGGAGCTGGAGGAGATCATGCTGACCGAAGAAGATGAGTTTTTGATAATGGGCTGTGATGGATTGTGGGATGTGATGAGCAGCCAGTGTGCTGTGACAATGGTGAGGAGGGAGATGATGCAGCATAATGATCCTAACAAATGTGCAAAAGTACTTGTTACTGAGGCCCTCCAACGCAACACTTGTGACAACCTCACAGTTGTGATTGTGTGTTTCTCCAAAGATCCACCTCCTAAAATTGAAATTCCTAGATCATGTAGGAGGAGGAGTATTTCTGCTGAGGGCCTTGATCTTCTCAAGGGTGTTTTGAATGGTAGATGA 1143 0.4497 MCEADTMSGVGGGCPCPRGNSDGAMEDLNGDTVGNLNQNAAKPPRDHSVMRHFSSSSWSAEPESNINIIGLKSSTEKKSDFPLEIRSGSYSDKGPKQYMEDEFICIDTLSECDGLGANLPSPAAFYGVFDGHGGVDAAAFTRKNILKFIVKDAHFPSSIKKAIKSAFVKADLAFRDASSLDNSSGTTALIALMLGSSMLIANAGDSRAVLGKRGRAVELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGSKGSKSPLSSEPELEEIMLTEEDEFLIMGCDGLWDVMSSQCAVTMVRREMMQHNDPNKCAKVLVTEALQRNTCDNLTVVIVCFSKDPPPKIEIPRSCRRRSISAEGLDLLKGVLNGR* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0870 380 CDD PP2Cc 85 346 IPR001932 -
Vra11g0870 380 Pfam Protein phosphatase 2C 93 338 IPR001932 -
Vra11g0870 380 Gene3D - 70 350 IPR036457 -
Vra11g0870 380 ProSitePatterns PPM-type phosphatase domain signature. 125 133 IPR000222 GO:0043169
Vra11g0870 380 PANTHER PROTEIN PHOSPHATASE 2C 23 366 IPR015655 GO:0004722|GO:0006470
Vra11g0870 380 MobiDBLite consensus disorder prediction 25 56 - -
Vra11g0870 380 PANTHER PROTEIN PHOSPHATASE 2C 47-RELATED 23 366 - -
Vra11g0870 380 SUPERFAMILY PP2C-like 81 347 IPR036457 -
Vra11g0870 380 SMART PP2C_4 76 344 IPR001932 -
Vra11g0870 380 ProSiteProfiles PPM-type phosphatase domain profile. 86 346 IPR001932 -
Vra11g0870 380 SMART PP2C_SIG_2 101 346 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0870 Vra-Chr11 7344440 7347634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0870 69 378 PP2C-type Phosphatase Gene Family AT3G51470 76.774 3.73e-175 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0870 K14803 - gmx:100786416 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0870 11 7344440 7347634 Vra11g0870 11 7344440 7347634 ECH