Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0867 ATGTCGTGTTCGTCGTCGTCGGGGTCGGAGGAAGACGATGAGGGATTCGACTCTTACCGGAAAGGAGGGTACCACGCCGTCAGAGTCGGCGATCAGTTCGGCGGCGGCAGGTACATAGCGCAGAGGAAACTGGGTTGGGGTCAGTTCTCCACCGTCTGGCTTGCTTACGATACTAAAACTTCTTCATTTGTTGCTCTCAAGATCCAGAAAAGTGCCGCCGAGTTTGTTCAGGCTGCCCTTCATGAGATTGATATTCTTTCATCCATTGCTGACCATGACCCATCAAATTCAAAATTTGTCATTCAATTGATTGACAACTTTAAGCACACTGGTCCAAATGGGCAGCATCTTTGCATGGTCCTGGAGTTTCTTGGCGATAGTTTGCTTCGCTTGATCAAATATAACCGTTACAAAGGCCTTCCATTGAATAAAGTTAGAGAGATTTGCAAATGCGTTTTAATTGGTTTGGACTACTTGCATACTGATCTTAGTATAATCCACTCTGACCTAAAACCTGAAAACATTCTTCTATGTTCAACCATTGATCCTGCCAAAGACCCTTTAAGATCTGGACTCTCTCCAATTCTAGAGCGACCTGAGGGAAACACAAATGGTGGAGTATCAAGTCTTATTGAGAAAAGGTTGAAAAGGAGAGCAAGGTCGGCAGTTGCTAAGATATCCGGAAGAAGAGGGTCAATGGGAGGAACAGAAGATGTTGCAAAGACCGATAGAAACATTGATGGGATTGATGTGAGATGCAAGATAGTAGATTTTGGAAATGCTTGTTGGGCTGAGAAGCAGTTTGCAGAAGAAATACAGACAAGACAGTACAGAGCACCTGAAGTTGTACTGATATCTGGCTATTCTTTCCCTGTTGACATGTGGTCTTTTGCTTGCATTGCTTTTGAACTAGCCACTGGAGATATGTTGTTTACACCAAAGGGTGGACAAGGTTTTAGTGAGGACGAGGATCACCTCGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCTATTGGTGGAGCTCAATCCAAGGATTACTTTGACAGGCATGGAGATCTTAAAAGGATTCGAAGGCTAAAATTCTGTCCACTAGACAAATTGCTGACTGATAAATATAAATTTTCAGTTAATGATGCTCAAGAGTTTTCAGAATTTCTTCTACCACTCTTTGATTTTGCCCCTGAGAAGCGACCAACTGCGAGACAGTGCCTGGAACATCCATGGCTGAAGTGCATGGAGTCCCCTCCAAATCAAACTGCTGAGGAAAAAGTGCATGTTGGAATGAGCAACCTTAAAATCTCACAGTCCAAGGCATAG 1329 0.4409 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVGDQFGGGRYIAQRKLGWGQFSTVWLAYDTKTSSFVALKIQKSAAEFVQAALHEIDILSSIADHDPSNSKFVIQLIDNFKHTGPNGQHLCMVLEFLGDSLLRLIKYNRYKGLPLNKVREICKCVLIGLDYLHTDLSIIHSDLKPENILLCSTIDPAKDPLRSGLSPILERPEGNTNGGVSSLIEKRLKRRARSAVAKISGRRGSMGGTEDVAKTDRNIDGIDVRCKIVDFGNACWAEKQFAEEIQTRQYRAPEVVLISGYSFPVDMWSFACIAFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFCPLDKLLTDKYKFSVNDAQEFSEFLLPLFDFAPEKRPTARQCLEHPWLKCMESPPNQTAEEKVHVGMSNLKISQSKA* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0867 442 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Vra11g0867 442 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Vra11g0867 442 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 439 - -
Vra11g0867 442 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0867 442 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0867 442 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0867 442 CDD STKc_SRPK 27 413 - -
Vra11g0867 442 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 439 - -
Vra11g0867 442 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Vra11g0867 442 SUPERFAMILY Protein kinase-like (PK-like) 34 421 IPR011009 -
Vra11g0867 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vra11g0867 442 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0867 Vra-Chr11 7322736 7326941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0867 4 413 EF-hand Containing Proteins AT5G22840 51.931 1.19e-167 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vra11g0867 Pkinase 4.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0867 K08832 - gmx:100793851 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0867 11 7322736 7326941 Vra11g0867 11 7322736 7326941 ECH
Vra11g0867 11 7322736 7326941 Vra7g0219 7 3277839 3281989 PCT