Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0855 ATGGATTCCACTTTGCTCACCAACTTACTACTCTTCAATAACACCGTCCAACCAGAGTTGATGAGGAGCCTGCATGTGTACCGGCAAGGGGATGAAGAGGAAAGGGCAGTTGAGAGGGAGTTTGTGTTTTCAGAGTGTGGCTCCTATGTGGAAATGCAGGCTACCCCAATTCTTAAATTTGTGAAATCCCATGTTTCTCGAGTGTTCCAAGGGTACAAGAATGGAGTGTGGCTATGTATCTTTGCGTATCATGCTGATCACACTCCTCGATTTTACCGGATTCCTCCGCTTTTGTTGGTCTCAAGAAACCCAAAGCTTCAGATGGTTCCAAACTTGCTCCATGATCTCCACGTGATATACAAGTTGGACAGGAAGGAGGAAGACAAAGATACAACTCTAGAATCTAAAGGGGAAGAATGTCAAGGGAACAGCGACAATTTCCAACCATCAGAAAAAGTCTTTCCCGTTCTTGATCAGGATCTCAATTATCTTCCTTACGAAGAAGATGAGTCTGAGTTACTAGAGAATGAGACAGATGTTGAAAGTTCACCAGGTTTGCTAGGGAAAAAAAAGAGGGCACCCAGTGACCTGGTAGCAAAAATTTCCTTATCAGATTTGGTCCAGTACTTTGGTATGCCAATCGTAGAAGCATCAAGAAATCTAAATGTTGGGCTTACTGTTCTTAAGAGAAAGTGCAGAGAATTTGGTATTCCCCGCTGGCCTCATAGGAAGATCAAGTCACTTGATAGTCTCATTCATGATCTTCAGGAAGAGGCAAAGAGCCAAGAATTGGAGGACATGGAAGCAGCAATGGCAGTGGCCAAGAGACAAAGGATGTTGGAGTGTGAAAAGGAAAACATAGAGAAGAAGCCCTTCATGGACATTCAAACCGAAACCAAGAGGTTCAGGCAGGATGTTTTCAAGAGAAGACACAGAGCAAGAGCTGTTGGAAAACATAATTCTACAGTATCCAACACATAG 981 0.4343 MDSTLLTNLLLFNNTVQPELMRSLHVYRQGDEEERAVEREFVFSECGSYVEMQATPILKFVKSHVSRVFQGYKNGVWLCIFAYHADHTPRFYRIPPLLLVSRNPKLQMVPNLLHDLHVIYKLDRKEEDKDTTLESKGEECQGNSDNFQPSEKVFPVLDQDLNYLPYEEDESELLENETDVESSPGLLGKKKRAPSDLVAKISLSDLVQYFGMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKSQELEDMEAAMAVAKRQRMLECEKENIEKKPFMDIQTETKRFRQDVFKRRHRARAVGKHNSTVSNT* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0855 326 PANTHER PROTEIN RKD5 10 318 - -
Vra11g0855 326 PANTHER PROTEIN RKD4 10 318 IPR044607 GO:0003700
Vra11g0855 326 Coils Coil 245 277 - -
Vra11g0855 326 Pfam RWP-RK domain 201 248 IPR003035 -
Vra11g0855 326 ProSiteProfiles RWP-RK domain profile. 183 268 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0855 Vra-Chr11 7201319 7206572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0855 16 326 AtRKD Transcription Factor Family AT4G35590 46.970 3.27e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vra11g0855 RWP-RK 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0855 - - gmx:113001653 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0855 11 7201319 7206572 Vra11g0855 11 7201319 7206572 ECH